Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP41Q3LFD5 AC067945.1-201ENST00000342609 618 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 RNU6-1066P-201ENST00000363573 105 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 SNORD116-23-201ENST00000384645 92 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 MTND2P16-201ENST00000419987 799 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 AC073335.1-201ENST00000427776 363 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 CETN4P-201ENST00000432407 469 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 YWHAZP8-201ENST00000436935 731 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 IFNWP4-201ENST00000453148 294 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
USP41Q3LFD5 RPL36AP13-201ENST00000457490 317 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 AC034244.1-201ENST00000507687 207 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 KRT19P6-201ENST00000510983 209 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 NDUFB4P12-201ENST00000513465 390 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 FABP5P12-201ENST00000515543 389 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 DUXAP5-201ENST00000529668 529 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 AC023050.2-201ENST00000544968 387 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP41Q3LFD5 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 GTF2IP8-201ENST00000560687 584 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 MIR5684-201ENST00000585074 65 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 MRPS35P3-201ENST00000603189 709 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 AL354760.1-201ENST00000608357 643 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.36□□□□□ -1.71
USP41Q3LFD5 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP41Q3LFD5 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
USP41Q3LFD5 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
USP41Q3LFD5 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP41Q3LFD5 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP41Q3LFD5 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
USP41Q3LFD5 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP41Q3LFD5 ERCC6-202ENST00000374127 1782 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USP41Q3LFD5 RNA5SP502-201ENST00000362694 119 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 PTMAP2-201ENST00000397627 327 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 MTND4P13-201ENST00000402078 1023 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 AL161449.1-201ENST00000414531 1199 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 AC105402.2-201ENST00000438503 358 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 ELOCP8-201ENST00000439309 332 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 ELOCP15-201ENST00000442090 332 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 HMGB3P21-201ENST00000452483 547 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 PNPLA4P1-201ENST00000458328 305 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 GAPDHP36-201ENST00000480688 918 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 RPL29P14-201ENST00000495837 428 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USP41Q3LFD5 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 EIF5A2P1-201ENST00000564027 460 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 AC022069.1-201ENST00000582910 658 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 AC107982.3-201ENST00000584957 985 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 AL357094.1-201ENST00000603845 844 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 AL592436.1-201ENST00000605135 558 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 AP003392.5-201ENST00000607857 415 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 AP000255.1-201ENST00000610276 676 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 TUSC7.1-201ENST00000610969 165 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 AC231759.1-201ENST00000616455 597 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.35□□□□□ -1.71
USP41Q3LFD5 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP41Q3LFD5 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USP41Q3LFD5 AC074029.4-201ENST00000624796 1859 ntBASIC4.35□□□□□ -1.71
USP41Q3LFD5 AC007529.1-201ENST00000418574 2178 ntBASIC4.34□□□□□ -1.71
USP41Q3LFD5 XPOTP1-201ENST00000443317 2398 ntBASIC4.34□□□□□ -1.71
USP41Q3LFD5 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.34□□□□□ -1.71
USP41Q3LFD5 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.34□□□□□ -1.71
USP41Q3LFD5 RNU6-984P-201ENST00000363236 109 ntBASIC4.34□□□□□ -1.71
USP41Q3LFD5 Y_RNA.192-201ENST00000363977 102 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms