Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MTND5P27-201ENST00000428871 1720 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA1P55317 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
FOXA1P55317 OR1S2-201ENST00000302592 978 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
FOXA1P55317 SNORD67-201ENST00000390833 111 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA1P55317 GSTA12P-201ENST00000402398 508 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 RPS3AP25-201ENST00000411660 793 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 TRGV6-201ENST00000417928 299 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 AC069157.1-201ENST00000421749 137 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 RPF2P1-201ENST00000424137 906 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 AC005300.1-201ENST00000428401 373 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 CYCSP43-201ENST00000438233 310 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC2.99□□□□□ -1.93
FOXA1P55317 CYCSP35-201ENST00000451978 304 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 CFTRP1-201ENST00000456646 183 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC2.99□□□□□ -1.93
FOXA1P55317 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.99□□□□□ -1.93
FOXA1P55317 AC118282.1-201ENST00000506408 765 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 AC021146.7-201ENST00000509604 775 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC2.99□□□□□ -1.93
FOXA1P55317 AC119751.1-201ENST00000513357 765 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.99□□□□□ -1.93
FOXA1P55317 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC2.99□□□□□ -1.93
FOXA1P55317 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.99□□□□□ -1.93
FOXA1P55317 AC025260.1-201ENST00000548858 430 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 AL389895.1-201ENST00000554127 252 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 NCAPGP2-201ENST00000557911 754 ntBASIC2.99□□□□□ -1.93
FOXA1P55317 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC2.99□□□□□ -1.93
FOXA1P55317 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC2.99□□□□□ -1.93
FOXA1P55317 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC2.99□□□□□ -1.93
FOXA1P55317 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC2.99□□□□□ -1.93
FOXA1P55317 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC2.99□□□□□ -1.93
FOXA1P55317 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.99□□□□□ -1.93
FOXA1P55317 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
FOXA1P55317 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA1P55317 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA1P55317 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA1P55317 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA1P55317 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA1P55317 AC073325.2-201ENST00000339545 159 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 RNA5SP387-201ENST00000364226 106 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 MIR421-201ENST00000365696 85 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXA1P55317 MIR7-1-201ENST00000384871 110 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 BTF3P9-201ENST00000418784 283 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 AC244453.4-201ENST00000419150 388 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 RFESDP1-201ENST00000422350 461 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 YME1L1P1-201ENST00000429435 297 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 AL050321.1-201ENST00000432363 400 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 AL353898.1-201ENST00000444055 238 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXA1P55317 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXA1P55317 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC2.98□□□□□ -1.93
FOXA1P55317 RNU6-1218P-201ENST00000458990 108 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 ACTR3BP4-201ENST00000503033 1244 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
FOXA1P55317 RNU6-347P-201ENST00000516658 105 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.98□□□□□ -1.93
FOXA1P55317 EIF4A2P3-201ENST00000525903 1055 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.98□□□□□ -1.93
FOXA1P55317 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC2.98□□□□□ -1.93
FOXA1P55317 MIR3944-201ENST00000581277 108 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 UBL5P2-201ENST00000583788 219 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXA1P55317 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.98□□□□□ -1.93
FOXA1P55317 AC069200.1-201ENST00000609511 323 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
FOXA1P55317 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA1P55317 U6.98-201ENST00000637157 84 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 AP001148.1-201ENST00000624124 2359 ntBASIC2.98□□□□□ -1.93
FOXA1P55317 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
FOXA1P55317 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA1P55317 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA1P55317 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
FOXA1P55317 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.98□□□□□ -1.93
FOXA1P55317 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
FOXA1P55317 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
FOXA1P55317 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA1P55317 ZNF542P-204ENST00000482727 1305 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.97□□□□□ -1.93
FOXA1P55317 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
FOXA1P55317 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA1P55317 RNU6-532P-201ENST00000384318 107 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 MIR92A2-201ENST00000385299 75 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA1P55317 AL138785.1-201ENST00000425821 331 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 RNF19BPX-201ENST00000426224 625 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 AC073069.1-201ENST00000428657 441 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC2.97□□□□□ -1.93
FOXA1P55317 AC011242.1-201ENST00000433596 1158 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA1P55317 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA1P55317 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA1P55317 AL353093.1-201ENST00000441292 436 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA1P55317 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA1P55317 RPL21P41-201ENST00000459863 264 ntBASIC2.97□□□□□ -1.93
FOXA1P55317 TMED11P-201ENST00000479478 690 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms