Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 IPO8P1-201ENST00000455509 3109 ntBASIC3.79□□□□□ -1.8
TNFRSF4P43489 ELL2P4-201ENST00000446870 1376 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 UBE3AP2-201ENST00000429033 2259 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
TNFRSF4P43489 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
TNFRSF4P43489 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
TNFRSF4P43489 DCAF13P1-201ENST00000495256 1330 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
TNFRSF4P43489 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
TNFRSF4P43489 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
TNFRSF4P43489 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
TNFRSF4P43489 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
TNFRSF4P43489 OR1L1-202ENST00000373686 1083 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
TNFRSF4P43489 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.78□□□□□ -1.8
TNFRSF4P43489 RNU6-925P-201ENST00000384629 104 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 RPL17P50-201ENST00000396131 546 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 SFR1P1-201ENST00000403720 688 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 ZNF603P-201ENST00000405613 487 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 AP000907.1-201ENST00000428428 510 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 AL159987.2-201ENST00000432754 307 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 MTCYBP15-201ENST00000433123 1127 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.78□□□□□ -1.8
TNFRSF4P43489 ARF4P4-201ENST00000439608 520 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 AL645931.1-201ENST00000439737 410 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 RPS3AP12-201ENST00000443616 753 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 CYCSP35-201ENST00000451978 304 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 AC073387.1-201ENST00000453261 709 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.78□□□□□ -1.8
TNFRSF4P43489 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.78□□□□□ -1.8
TNFRSF4P43489 PRELID3BP7-201ENST00000503606 469 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 AC074250.1-201ENST00000511117 192 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 RAC1P2-201ENST00000511164 579 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.78□□□□□ -1.8
TNFRSF4P43489 AC016065.2-201ENST00000514530 444 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC3.78□□□□□ -1.8
TNFRSF4P43489 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.78□□□□□ -1.8
TNFRSF4P43489 OR1AB1P-201ENST00000585564 761 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.78□□□□□ -1.8
TNFRSF4P43489 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.78□□□□□ -1.8
TNFRSF4P43489 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
TNFRSF4P43489 AL020997.3-201ENST00000602843 359 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 AL390816.3-201ENST00000604527 1066 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 AC007275.1-201ENST00000621243 671 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 AC006065.5-201ENST00000623427 349 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
TNFRSF4P43489 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.78□□□□□ -1.8
TNFRSF4P43489 AC073346.2-201ENST00000624724 2058 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 SAGE4P-201ENST00000442271 3381 ntBASIC3.78□□□□□ -1.8
TNFRSF4P43489 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
TNFRSF4P43489 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
TNFRSF4P43489 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
TNFRSF4P43489 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC3.77□□□□□ -1.81
TNFRSF4P43489 SOD2P1-201ENST00000396543 562 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 RPL7P27-201ENST00000403775 720 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC069218.2-201ENST00000411665 344 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 LIPT1P1-201ENST00000415870 1186 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC245052.5-201ENST00000416320 649 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC233981.1-201ENST00000423224 461 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 CYCSP4-201ENST00000429682 331 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC092641.1-201ENST00000440229 772 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 FCF1P6-201ENST00000456841 595 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 PLGLA-201ENST00000465668 449 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 WBP1LP4-201ENST00000505043 344 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 RANP9-201ENST00000519957 271 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AP001207.1-201ENST00000524051 481 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 OR8K4P-201ENST00000534608 872 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC090877.1-201ENST00000561418 344 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC090666.1-201ENST00000578241 445 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AP001542.2-201ENST00000593141 364 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 MRPS35P3-201ENST00000603189 709 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 YWHAQP7-201ENST00000603536 658 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC007566.2-201ENST00000603642 413 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 RNA5SP108-201ENST00000605921 117 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC097504.2-201ENST00000608088 454 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC079684.1-201ENST00000621405 437 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 AC119674.1-207ENST00000641355 633 ntBASIC3.77□□□□□ -1.81
TNFRSF4P43489 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
TNFRSF4P43489 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 152.7 ms