Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HTTP42858 Y_RNA.164-201ENST00000363709 102 ntBASIC3.07□□□□□ -1.92
HTTP42858 RNU4-53P-201ENST00000410828 140 ntBASIC3.07□□□□□ -1.92
HTTP42858 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.07□□□□□ -1.92
HTTP42858 RN7SL330P-201ENST00000469709 307 ntBASIC3.07□□□□□ -1.92
HTTP42858 AC093663.2-201ENST00000484625 313 ntBASIC3.07□□□□□ -1.92
HTTP42858 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.07□□□□□ -1.92
HTTP42858 AC091903.1-201ENST00000624322 454 ntBASIC3.07□□□□□ -1.92
HTTP42858 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.07□□□□□ -1.92
HTTP42858 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC3.07□□□□□ -1.92
HTTP42858 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HTTP42858 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
HTTP42858 AL592494.2-201ENST00000425455 1548 ntBASIC3.07□□□□□ -1.92
HTTP42858 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.07□□□□□ -1.92
HTTP42858 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HTTP42858 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HTTP42858 RNU6-76P-201ENST00000384060 104 ntBASIC3.07□□□□□ -1.92
HTTP42858 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
HTTP42858 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HTTP42858 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.07□□□□□ -1.92
HTTP42858 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC3.07□□□□□ -1.92
HTTP42858 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.07□□□□□ -1.92
HTTP42858 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
HTTP42858 AC138627.1-204ENST00000641894 765 ntBASIC3.07□□□□□ -1.92
HTTP42858 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.07□□□□□ -1.92
HTTP42858 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC3.07□□□□□ -1.92
HTTP42858 LINC01355-201ENST00000566551 5444 ntBASIC3.07□□□□□ -1.92
HTTP42858 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC3.07□□□□□ -1.92
HTTP42858 DDX18P3-201ENST00000404856 2007 ntBASIC3.06□□□□□ -1.92
HTTP42858 AL161781.1-201ENST00000354277 403 ntBASIC3.06□□□□□ -1.92
HTTP42858 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HTTP42858 RNA5SP425-201ENST00000410336 112 ntBASIC3.06□□□□□ -1.92
HTTP42858 MTCO1P39-201ENST00000426148 480 ntBASIC3.06□□□□□ -1.92
HTTP42858 AC126121.1-201ENST00000482313 553 ntBASIC3.06□□□□□ -1.92
HTTP42858 RPL36AP21-201ENST00000490372 323 ntBASIC3.06□□□□□ -1.92
HTTP42858 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC3.06□□□□□ -1.92
HTTP42858 AC005921.1-201ENST00000510589 286 ntBASIC3.06□□□□□ -1.92
HTTP42858 AP003102.1-201ENST00000525638 661 ntBASIC3.06□□□□□ -1.92
HTTP42858 AC015813.4-201ENST00000610469 179 ntBASIC3.06□□□□□ -1.92
HTTP42858 AC019080.5-201ENST00000624891 757 ntBASIC3.06□□□□□ -1.92
HTTP42858 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HTTP42858 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC3.06□□□□□ -1.92
HTTP42858 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
HTTP42858 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.06□□□□□ -1.92
HTTP42858 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.06□□□□□ -1.92
HTTP42858 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.06□□□□□ -1.92
HTTP42858 RNA5SP320-201ENST00000516263 124 ntBASIC3.06□□□□□ -1.92
HTTP42858 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.06□□□□□ -1.92
HTTP42858 MIR4727-201ENST00000622232 55 ntBASIC3.06□□□□□ -1.92
HTTP42858 SYT14P1-202ENST00000600441 1448 ntBASIC3.06□□□□□ -1.92
HTTP42858 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.06□□□□□ -1.92
HTTP42858 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC3.06□□□□□ -1.92
HTTP42858 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.06□□□□□ -1.92
HTTP42858 FAM35DP-201ENST00000323387 2712 ntBASIC3.06□□□□□ -1.92
HTTP42858 SNORD114-30-201ENST00000364448 72 ntBASIC3.06□□□□□ -1.92
HTTP42858 SNORA36C-201ENST00000384289 132 ntBASIC3.06□□□□□ -1.92
HTTP42858 AL592045.1-201ENST00000429867 352 ntBASIC3.06□□□□□ -1.92
HTTP42858 AC006445.2-201ENST00000510061 472 ntBASIC3.06□□□□□ -1.92
HTTP42858 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC3.06□□□□□ -1.92
HTTP42858 AC103810.6-201ENST00000606708 136 ntBASIC3.06□□□□□ -1.92
HTTP42858 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HTTP42858 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HTTP42858 AC008079.2-201ENST00000623543 20396 ntBASIC3.05□□□□□ -1.92
HTTP42858 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HTTP42858 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.05□□□□□ -1.92
HTTP42858 RNA5SP322-201ENST00000363617 119 ntBASIC3.05□□□□□ -1.92
HTTP42858 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC3.05□□□□□ -1.92
HTTP42858 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.05□□□□□ -1.92
HTTP42858 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.05□□□□□ -1.92
HTTP42858 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.05□□□□□ -1.92
HTTP42858 AC103798.2-201ENST00000624292 632 ntBASIC3.05□□□□□ -1.92
HTTP42858 GVINP1-202ENST00000531871 7271 ntBASIC3.05□□□□□ -1.92
HTTP42858 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HTTP42858 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HTTP42858 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.05□□□□□ -1.92
HTTP42858 RPL21P132-201ENST00000331267 462 ntBASIC3.05□□□□□ -1.92
HTTP42858 OR2B8P-201ENST00000432841 938 ntBASIC3.05□□□□□ -1.92
HTTP42858 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.05□□□□□ -1.92
HTTP42858 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.05□□□□□ -1.92
HTTP42858 AC009063.1-201ENST00000563342 702 ntBASIC3.05□□□□□ -1.92
HTTP42858 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HTTP42858 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HTTP42858 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
HTTP42858 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HTTP42858 SYT14P1-201ENST00000481459 721 ntBASIC3.04□□□□□ -1.92
HTTP42858 SRIP1-201ENST00000489235 288 ntBASIC3.04□□□□□ -1.92
HTTP42858 AC007938.3-201ENST00000604965 623 ntBASIC3.04□□□□□ -1.92
HTTP42858 AC010680.4-201ENST00000605334 543 ntBASIC3.04□□□□□ -1.92
HTTP42858 AC244205.2-202ENST00000635781 342 ntBASIC3.04□□□□□ -1.92
HTTP42858 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
HTTP42858 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HTTP42858 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC3.04□□□□□ -1.92
HTTP42858 RNU6-618P-201ENST00000363518 112 ntBASIC3.04□□□□□ -1.92
HTTP42858 HNRNPKP5-201ENST00000515300 253 ntBASIC3.04□□□□□ -1.92
HTTP42858 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.04□□□□□ -1.92
HTTP42858 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
HTTP42858 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HTTP42858 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HTTP42858 AC092593.1-201ENST00000515413 1815 ntBASIC3.04□□□□□ -1.92
HTTP42858 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms