Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL359643.1-201ENST00000404109 423 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AL583834.1-201ENST00000406943 343 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 RN7SKP293-201ENST00000411389 296 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC5.58□□□□□ -1.52
COL8A1P27658 RPS27P18-201ENST00000431701 247 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 TIMM9P1-201ENST00000436122 256 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 FABP5P2-201ENST00000439042 408 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC114495.1-201ENST00000441274 436 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC005297.2-201ENST00000450430 606 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 RPL9P32-201ENST00000464118 620 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 RN7SL382P-201ENST00000482631 282 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.58□□□□□ -1.52
COL8A1P27658 AC063943.2-201ENST00000495697 534 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.58□□□□□ -1.52
COL8A1P27658 PGAM1P13-201ENST00000507497 754 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC095057.1-201ENST00000507583 168 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 EIF3KP3-201ENST00000514461 639 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 RNU6-479P-201ENST00000516348 105 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC5.58□□□□□ -1.52
COL8A1P27658 AF279873.1-201ENST00000523393 313 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC5.58□□□□□ -1.52
COL8A1P27658 AP006587.4-201ENST00000526053 529 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC5.58□□□□□ -1.52
COL8A1P27658 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC5.58□□□□□ -1.52
COL8A1P27658 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.58□□□□□ -1.52
COL8A1P27658 AC127381.1-201ENST00000555979 939 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC5.58□□□□□ -1.52
COL8A1P27658 AC090517.1-201ENST00000569307 266 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC5.58□□□□□ -1.52
COL8A1P27658 AC020910.3-201ENST00000603701 874 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 SUMO2P15-201ENST00000604285 278 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AL589674.2-201ENST00000604304 337 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC024940.4-201ENST00000605507 246 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 DUSP12P1-201ENST00000612874 516 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC245014.3-201ENST00000618589 347 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AL357559.1-201ENST00000622228 274 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AL159972.1-201ENST00000625150 448 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC021753.1-201ENST00000635724 168 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL8A1P27658 AC093311.1-201ENST00000506586 2021 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC5.58□□□□□ -1.52
COL8A1P27658 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL8A1P27658 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL8A1P27658 AC083806.2-201ENST00000617795 2685 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL8A1P27658 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
COL8A1P27658 AC027287.1-201ENST00000553115 1453 ntBASIC5.58□□□□□ -1.52
COL8A1P27658 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC5.57□□□□□ -1.52
COL8A1P27658 AC008669.1-201ENST00000565823 2178 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 MAPK10-323ENST00000641493 3207 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.57□□□□□ -1.52
COL8A1P27658 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC5.57□□□□□ -1.52
COL8A1P27658 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
COL8A1P27658 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC5.57□□□□□ -1.52
COL8A1P27658 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 AC002525.1-201ENST00000624392 1622 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
COL8A1P27658 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
COL8A1P27658 Y_RNA.83-201ENST00000363005 113 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 RN7SKP115-201ENST00000363177 317 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 U3.7-201ENST00000363668 216 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 RNY3P13-201ENST00000365542 102 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL8A1P27658 RNU4ATAC2P-201ENST00000408674 126 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 MIR1298-201ENST00000408783 112 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 AC096664.2-201ENST00000411843 406 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 CYP4F32P-201ENST00000426492 504 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.57□□□□□ -1.52
COL8A1P27658 RPS3AP46-201ENST00000448352 682 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 CHEK2P4-201ENST00000450340 246 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.57□□□□□ -1.52
COL8A1P27658 LINC01399-202ENST00000458450 244 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.57□□□□□ -1.52
COL8A1P27658 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC5.57□□□□□ -1.52
COL8A1P27658 AC026979.1-201ENST00000492525 396 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 NDUFB5P1-201ENST00000508134 564 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 SNORA31.6-201ENST00000516241 130 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 RNU6-897P-201ENST00000517135 105 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.57□□□□□ -1.52
COL8A1P27658 IGKV2D-10-201ENST00000520194 281 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 AC087441.2-201ENST00000529141 262 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 AC091516.1-201ENST00000549191 703 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.57□□□□□ -1.52
COL8A1P27658 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.57□□□□□ -1.52
COL8A1P27658 MIR1269B-201ENST00000580405 75 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.57□□□□□ -1.52
COL8A1P27658 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.57□□□□□ -1.52
COL8A1P27658 AC139493.1-201ENST00000604368 397 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 HMGN2P28-201ENST00000606102 262 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 BX284668.6-201ENST00000606899 438 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 AC093799.2-201ENST00000610062 578 ntBASIC5.57□□□□□ -1.52
COL8A1P27658 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms