Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNU2-22P-201ENST00000411266 212 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 MYL8P-204ENST00000431574 518 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 HSPE1P6-201ENST00000479457 291 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 SCGB1D5P-201ENST00000515134 247 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 AC104027.1-201ENST00000521887 300 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL5A3P25940 AC027176.1-201ENST00000560204 514 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC3.61□□□□□ -1.83
COL5A3P25940 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.61□□□□□ -1.83
COL5A3P25940 AL008729.2-201ENST00000606393 473 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 AL158196.1-201ENST00000616786 434 ntBASIC3.61□□□□□ -1.83
COL5A3P25940 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL5A3P25940 AC021755.1-201ENST00000559747 1447 ntBASIC3.6□□□□□ -1.83
COL5A3P25940 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
COL5A3P25940 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL5A3P25940 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC3.6□□□□□ -1.83
COL5A3P25940 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.6□□□□□ -1.83
COL5A3P25940 MIR708-201ENST00000390708 88 ntBASIC3.6□□□□□ -1.83
COL5A3P25940 MIR1261-201ENST00000408659 82 ntBASIC3.6□□□□□ -1.83
COL5A3P25940 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.6□□□□□ -1.83
COL5A3P25940 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC3.6□□□□□ -1.83
COL5A3P25940 ST13P14-201ENST00000474095 734 ntBASIC3.6□□□□□ -1.83
COL5A3P25940 AC104687.1-201ENST00000485829 412 ntBASIC3.6□□□□□ -1.83
COL5A3P25940 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.6□□□□□ -1.83
COL5A3P25940 AC021146.1-201ENST00000511202 716 ntBASIC3.6□□□□□ -1.83
COL5A3P25940 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.6□□□□□ -1.83
COL5A3P25940 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
COL5A3P25940 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.6□□□□□ -1.83
COL5A3P25940 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC3.6□□□□□ -1.83
COL5A3P25940 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.6□□□□□ -1.83
COL5A3P25940 AL049555.1-201ENST00000562834 1933 ntBASIC3.6□□□□□ -1.83
COL5A3P25940 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL5A3P25940 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.6□□□□□ -1.83
COL5A3P25940 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
COL5A3P25940 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL5A3P25940 AL360182.1-201ENST00000397433 468 ntBASIC3.59□□□□□ -1.83
COL5A3P25940 RHEBP3-201ENST00000411920 351 ntBASIC3.59□□□□□ -1.83
COL5A3P25940 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL5A3P25940 RPL29P29-201ENST00000448725 423 ntBASIC3.59□□□□□ -1.83
COL5A3P25940 BX276092.4-201ENST00000452056 248 ntBASIC3.59□□□□□ -1.83
COL5A3P25940 AP001025.2-201ENST00000490908 477 ntBASIC3.59□□□□□ -1.83
COL5A3P25940 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.59□□□□□ -1.83
COL5A3P25940 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL5A3P25940 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.59□□□□□ -1.83
COL5A3P25940 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL5A3P25940 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL5A3P25940 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC3.59□□□□□ -1.84
COL5A3P25940 GLS-203ENST00000409215 632 ntTSL 4 BASIC3.58□□□□□ -1.84
COL5A3P25940 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.58□□□□□ -1.84
COL5A3P25940 AL513328.1-201ENST00000446460 224 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.58□□□□□ -1.84
COL5A3P25940 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL5A3P25940 SRIP1-201ENST00000489235 288 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.58□□□□□ -1.84
COL5A3P25940 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL5A3P25940 SERPINE4P-201ENST00000554978 281 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 MIR4435-1-201ENST00000582552 80 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 AL137072.1-201ENST00000603444 466 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.58□□□□□ -1.84
COL5A3P25940 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC3.58□□□□□ -1.84
COL5A3P25940 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL5A3P25940 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL5A3P25940 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL5A3P25940 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
COL5A3P25940 ELF2P3-201ENST00000445099 1506 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL5A3P25940 AL138827.1-201ENST00000402666 306 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 RN7SKP58-201ENST00000411010 305 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.58□□□□□ -1.84
COL5A3P25940 AC105918.1-201ENST00000474399 838 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 AC126121.1-201ENST00000482313 553 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.58□□□□□ -1.84
COL5A3P25940 AC106734.1-201ENST00000568646 663 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.58□□□□□ -1.84
COL5A3P25940 AC079089.3-201ENST00000603094 673 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 AC006111.3-201ENST00000622137 383 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL5A3P25940 AL031985.3-201ENST00000565390 2449 ntBASIC3.58□□□□□ -1.84
COL5A3P25940 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL5A3P25940 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL5A3P25940 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL5A3P25940 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.57□□□□□ -1.84
COL5A3P25940 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.57□□□□□ -1.84
COL5A3P25940 RNU1-75P-201ENST00000347264 129 ntBASIC3.57□□□□□ -1.84
COL5A3P25940 SNORD56.3-201ENST00000363507 71 ntBASIC3.57□□□□□ -1.84
COL5A3P25940 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC3.57□□□□□ -1.84
COL5A3P25940 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL5A3P25940 MIR4769-201ENST00000584126 77 ntBASIC3.57□□□□□ -1.84
COL5A3P25940 AC026790.2-201ENST00000606282 430 ntBASIC3.57□□□□□ -1.84
COL5A3P25940 AC131238.1-201ENST00000617135 328 ntBASIC3.57□□□□□ -1.84
COL5A3P25940 AC006840.1-201ENST00000623069 542 ntBASIC3.57□□□□□ -1.84
COL5A3P25940 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.57□□□□□ -1.84
COL5A3P25940 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL5A3P25940 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC3.57□□□□□ -1.84
COL5A3P25940 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL5A3P25940 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL5A3P25940 SNORA46-201ENST00000384762 135 ntBASIC3.56□□□□□ -1.84
COL5A3P25940 RPL30P2-201ENST00000414021 291 ntBASIC3.56□□□□□ -1.84
COL5A3P25940 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms