Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.94□□□□□ -1.94
VCANP13611 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
VCANP13611 Y_RNA.122-201ENST00000363331 96 ntBASIC2.94□□□□□ -1.94
VCANP13611 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.94□□□□□ -1.94
VCANP13611 ANP32BP2-201ENST00000454525 545 ntBASIC2.94□□□□□ -1.94
VCANP13611 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC2.94□□□□□ -1.94
VCANP13611 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.94□□□□□ -1.94
VCANP13611 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC2.94□□□□□ -1.94
VCANP13611 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC2.94□□□□□ -1.94
VCANP13611 SULT1C2P2-201ENST00000562517 294 ntBASIC2.94□□□□□ -1.94
VCANP13611 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC2.94□□□□□ -1.94
VCANP13611 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC2.94□□□□□ -1.94
VCANP13611 AC015871.2-201ENST00000603605 948 ntBASIC2.94□□□□□ -1.94
VCANP13611 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC2.94□□□□□ -1.94
VCANP13611 AC079228.1-201ENST00000624774 1049 ntBASIC2.94□□□□□ -1.94
VCANP13611 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC2.94□□□□□ -1.94
VCANP13611 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
VCANP13611 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
VCANP13611 MIR513A2-201ENST00000385249 127 ntBASIC2.94□□□□□ -1.94
VCANP13611 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC2.94□□□□□ -1.94
VCANP13611 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC2.94□□□□□ -1.94
VCANP13611 OR4U1P-201ENST00000554958 912 ntBASIC2.94□□□□□ -1.94
VCANP13611 FAM35DP-201ENST00000323387 2712 ntBASIC2.94□□□□□ -1.94
VCANP13611 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC2.94□□□□□ -1.94
VCANP13611 AL139039.1-201ENST00000401900 692 ntBASIC2.94□□□□□ -1.94
VCANP13611 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
VCANP13611 AP005136.1-201ENST00000579765 429 ntBASIC2.94□□□□□ -1.94
VCANP13611 VN1R9P-201ENST00000614184 867 ntBASIC2.94□□□□□ -1.94
VCANP13611 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.94□□□□□ -1.94
VCANP13611 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.94□□□□□ -1.94
VCANP13611 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
VCANP13611 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
VCANP13611 AL590290.1-201ENST00000405336 380 ntBASIC2.93□□□□□ -1.94
VCANP13611 RNA5SP146-201ENST00000410743 123 ntBASIC2.93□□□□□ -1.94
VCANP13611 AC025445.1-201ENST00000502728 300 ntBASIC2.93□□□□□ -1.94
VCANP13611 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
VCANP13611 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.93□□□□□ -1.94
VCANP13611 AC092608.2-201ENST00000624427 218 ntBASIC2.93□□□□□ -1.94
VCANP13611 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.93□□□□□ -1.94
VCANP13611 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
VCANP13611 AL353729.1-201ENST00000425044 720 ntBASIC2.93□□□□□ -1.94
VCANP13611 AL356320.1-201ENST00000429616 163 ntBASIC2.93□□□□□ -1.94
VCANP13611 RPL23AP15-201ENST00000450202 459 ntBASIC2.93□□□□□ -1.94
VCANP13611 TRBV8-2-201ENST00000475637 270 ntBASIC2.93□□□□□ -1.94
VCANP13611 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC2.93□□□□□ -1.94
VCANP13611 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.93□□□□□ -1.94
VCANP13611 AC117522.3-201ENST00000507974 584 ntBASIC2.93□□□□□ -1.94
VCANP13611 RN7SKP272-201ENST00000516988 232 ntBASIC2.93□□□□□ -1.94
VCANP13611 AP000859.1-201ENST00000525536 307 ntBASIC2.93□□□□□ -1.94
VCANP13611 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.93□□□□□ -1.94
VCANP13611 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC2.93□□□□□ -1.94
VCANP13611 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
VCANP13611 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
VCANP13611 USP8P1-201ENST00000494673 3183 ntBASIC2.93□□□□□ -1.94
VCANP13611 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
VCANP13611 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VCANP13611 HSPE1P8-201ENST00000406997 288 ntBASIC2.92□□□□□ -1.94
VCANP13611 AL135786.1-201ENST00000415892 214 ntBASIC2.92□□□□□ -1.94
VCANP13611 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VCANP13611 RNA5SP154-201ENST00000516193 111 ntBASIC2.92□□□□□ -1.94
VCANP13611 MIR486-1-201ENST00000612171 68 ntBASIC2.92□□□□□ -1.94
VCANP13611 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VCANP13611 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC2.92□□□□□ -1.94
VCANP13611 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
VCANP13611 STK31-205ENST00000433467 3085 ntTSL 2 BASIC2.92□□□□□ -1.94
VCANP13611 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
VCANP13611 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VCANP13611 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VCANP13611 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VCANP13611 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VCANP13611 RHOT1P2-201ENST00000366423 333 ntBASIC2.92□□□□□ -1.94
VCANP13611 RPL31P45-201ENST00000419532 356 ntBASIC2.92□□□□□ -1.94
VCANP13611 MTND2P25-201ENST00000449028 610 ntBASIC2.92□□□□□ -1.94
VCANP13611 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC2.92□□□□□ -1.94
VCANP13611 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC2.92□□□□□ -1.94
VCANP13611 AC025034.2-201ENST00000623264 286 ntBASIC2.92□□□□□ -1.94
VCANP13611 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VCANP13611 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VCANP13611 NCAPGP1-201ENST00000505112 1814 ntBASIC2.92□□□□□ -1.94
VCANP13611 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
VCANP13611 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC2.92□□□□□ -1.94
VCANP13611 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.92□□□□□ -1.94
VCANP13611 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
VCANP13611 SNORD114-1-201ENST00000362705 72 ntBASIC2.92□□□□□ -1.94
VCANP13611 RNU6-14P-201ENST00000384630 106 ntBASIC2.92□□□□□ -1.94
VCANP13611 USP12PY-201ENST00000427677 1064 ntBASIC2.92□□□□□ -1.94
VCANP13611 BTF3L4P4-201ENST00000506381 449 ntBASIC2.92□□□□□ -1.94
VCANP13611 AC005921.1-201ENST00000510589 286 ntBASIC2.92□□□□□ -1.94
VCANP13611 AC007954.1-201ENST00000554198 494 ntBASIC2.92□□□□□ -1.94
VCANP13611 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
VCANP13611 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
VCANP13611 SNORA36C-201ENST00000384289 132 ntBASIC2.91□□□□□ -1.94
VCANP13611 AC010307.1-201ENST00000467206 836 ntBASIC2.91□□□□□ -1.94
VCANP13611 CYP2C60P-201ENST00000566088 139 ntBASIC2.91□□□□□ -1.94
VCANP13611 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
VCANP13611 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
VCANP13611 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.91□□□□□ -1.94
VCANP13611 RNA5SP39-201ENST00000411245 120 ntBASIC2.91□□□□□ -1.94
VCANP13611 AL121882.1-201ENST00000422893 417 ntBASIC2.91□□□□□ -1.94
VCANP13611 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms