Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
COL6A1P12109 Y_RNA.70-201ENST00000362886 110 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 SNORA72.1-201ENST00000363485 129 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 RNU6-1066P-201ENST00000363573 105 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 RNA5SP509-201ENST00000364577 119 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A1P12109 CIR1P3-201ENST00000405137 479 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 RPL23AP47-201ENST00000408017 460 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 USP9YP6-201ENST00000413550 854 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 OR51A3P-201ENST00000413596 924 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC5.44□□□□□ -1.54
COL6A1P12109 AC114814.2-201ENST00000419195 485 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 AC009237.2-201ENST00000421358 284 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 AL354766.1-201ENST00000423396 542 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 AC233728.2-201ENST00000425348 757 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 COX6CP13-201ENST00000428703 226 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 SKP1P3-201ENST00000429280 487 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 AC023347.2-201ENST00000433994 462 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.44□□□□□ -1.54
COL6A1P12109 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.44□□□□□ -1.54
COL6A1P12109 AL831737.1-201ENST00000441288 271 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC5.44□□□□□ -1.54
COL6A1P12109 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC5.44□□□□□ -1.54
COL6A1P12109 USP9YP34-201ENST00000453983 808 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A1P12109 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC5.44□□□□□ -1.54
COL6A1P12109 AC098799.2-201ENST00000509466 868 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC5.44□□□□□ -1.54
COL6A1P12109 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.44□□□□□ -1.54
COL6A1P12109 AC124947.2-202ENST00000552735 133 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC5.44□□□□□ -1.54
COL6A1P12109 AC106785.1-201ENST00000565935 262 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 AP001004.1-201ENST00000582468 324 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 AC006504.3-201ENST00000586818 523 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 VN1R85P-201ENST00000601587 426 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 AP001330.5-201ENST00000607176 411 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 MIR92B-201ENST00000607575 96 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 FAM27B-201ENST00000610601 213 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.44□□□□□ -1.54
COL6A1P12109 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.44□□□□□ -1.54
COL6A1P12109 MAPK10-328ENST00000641553 4009 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A1P12109 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
COL6A1P12109 ABCC13-202ENST00000463099 3842 ntBASIC5.44□□□□□ -1.54
COL6A1P12109 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL6A1P12109 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.44□□□□□ -1.54
COL6A1P12109 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A1P12109 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A1P12109 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
COL6A1P12109 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
COL6A1P12109 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A1P12109 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A1P12109 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
COL6A1P12109 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A1P12109 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.43□□□□□ -1.54
COL6A1P12109 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 RNU6-619P-201ENST00000365146 108 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 SNORA51.12-201ENST00000384448 134 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 AL390316.1-201ENST00000406279 553 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 RN7SKP285-201ENST00000410137 318 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC5.43□□□□□ -1.54
COL6A1P12109 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC5.43□□□□□ -1.54
COL6A1P12109 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.43□□□□□ -1.54
COL6A1P12109 AL512649.1-201ENST00000428997 581 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 USP12PX-201ENST00000432383 1057 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 BMS1P19-201ENST00000433925 393 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.43□□□□□ -1.54
COL6A1P12109 HMGB1P31-201ENST00000437242 427 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC5.43□□□□□ -1.54
COL6A1P12109 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC5.43□□□□□ -1.54
COL6A1P12109 MED28P3-201ENST00000444288 531 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC5.43□□□□□ -1.54
COL6A1P12109 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC5.43□□□□□ -1.54
COL6A1P12109 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC5.43□□□□□ -1.54
COL6A1P12109 AC108463.1-201ENST00000450258 347 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.43□□□□□ -1.54
COL6A1P12109 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC5.43□□□□□ -1.54
COL6A1P12109 AC091180.1-201ENST00000462104 372 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 AP000797.1-201ENST00000478870 387 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 RPL7P38-201ENST00000488396 739 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.43□□□□□ -1.54
COL6A1P12109 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.43□□□□□ -1.54
COL6A1P12109 AC133555.2-201ENST00000550213 292 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A1P12109 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC5.43□□□□□ -1.54
COL6A1P12109 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.43□□□□□ -1.54
COL6A1P12109 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.43□□□□□ -1.54
COL6A1P12109 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.43□□□□□ -1.54
COL6A1P12109 AC091834.1-201ENST00000614543 472 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.43□□□□□ -1.54
COL6A1P12109 AC092650.2-201ENST00000619984 902 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 AL139089.1-201ENST00000620372 975 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 AC000123.2-201ENST00000623124 461 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 AC138965.3-201ENST00000623875 498 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC5.43□□□□□ -1.54
COL6A1P12109 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.43□□□□□ -1.54
COL6A1P12109 AC021242.1-201ENST00000507315 2035 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL6A1P12109 AC107982.1-201ENST00000507171 1300 ntBASIC5.43□□□□□ -1.54
COL6A1P12109 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms