Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
CHKB-CPT1BH3BT56 AC099654.7-201ENST00000635788 2127 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 RN7SKP187-201ENST00000365536 330 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 NFIB-202ENST00000380924 840 ntTSL 5 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 RNU6-629P-201ENST00000384061 103 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AL161909.1-201ENST00000397390 712 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC025750.1-201ENST00000399891 379 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 SNX10-203ENST00000409367 746 ntTSL 5 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 SUMO1P4-201ENST00000429430 302 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 RPS7P2-201ENST00000435134 607 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AL645931.1-201ENST00000439737 410 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AL592437.1-201ENST00000443781 492 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AL109741.2-201ENST00000455561 343 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 RN7SL385P-201ENST00000468873 276 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 BX284632.1-201ENST00000478218 541 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 RPL7P23-201ENST00000493874 747 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 RPS27AP13-201ENST00000498403 237 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC104619.4-201ENST00000510773 249 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 SNORA31.11-201ENST00000516528 139 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC005363.1-201ENST00000530779 351 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AHI1-217ENST00000534469 680 ntTSL 3 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC008083.2-201ENST00000546707 476 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 NOP56P3-201ENST00000549457 385 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 PSMB7P1-201ENST00000556349 514 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC009220.3-201ENST00000604318 586 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AL137843.1-201ENST00000605078 385 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC104237.2-201ENST00000612456 443 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 ZNF33BP1-201ENST00000452497 1834 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AC005261.4-201ENST00000600047 1385 ntBASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC1.7□□□□□ -2.14
CHKB-CPT1BH3BT56 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AL139276.1-201ENST00000311910 1001 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 RPL9P7-201ENST00000330965 580 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AL590004.2-201ENST00000404787 371 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 RSL24D1P1-201ENST00000404972 493 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 HNRNPDP2-201ENST00000406475 478 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 SNORA3.3-201ENST00000408712 125 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AL513477.1-202ENST00000417061 214 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 UBE2D3P2-201ENST00000424409 445 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 OR4F13P-201ENST00000428478 931 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 PSMA2P3-201ENST00000429685 675 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 TEX41-205ENST00000431734 529 ntTSL 4 BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AL031663.1-201ENST00000437445 219 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AL671855.1-201ENST00000446875 1203 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 PRDX3P3-201ENST00000447765 522 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 BX276092.4-201ENST00000452056 248 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 snoU13.24-201ENST00000458998 104 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 KC877373.1-201ENST00000479066 408 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 RN7SL633P-201ENST00000488974 297 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AC112198.1-201ENST00000505369 1220 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AC025674.1-201ENST00000507074 324 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 HIGD1AP3-201ENST00000515857 278 ntBASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC1.69□□□□□ -2.14
CHKB-CPT1BH3BT56 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms