Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 U3.3-201ENST00000362986 216 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 U8.3-201ENST00000363321 132 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 RNU6-730P-201ENST00000383954 104 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 MIR600-201ENST00000385007 98 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 SNORA48.4-201ENST00000391089 134 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 CIR1P3-201ENST00000405137 479 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AL592293.2-201ENST00000422292 996 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AL353777.1-201ENST00000425552 326 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 RBMX2P4-201ENST00000441256 376 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 RPL7P15-201ENST00000461190 712 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AP001992.1-205ENST00000462248 379 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AC109462.1-201ENST00000491087 368 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AC012170.1-201ENST00000495139 359 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AC006427.1-201ENST00000514359 712 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AC022832.1-201ENST00000530718 645 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 MEG8-218ENST00000556720 456 ntTSL 3 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AC068135.2-201ENST00000569293 1028 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 ELOCP28-201ENST00000590044 317 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AL161734.1-201ENST00000609720 557 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AL596245.1-201ENST00000618994 362 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AL356321.1-201ENST00000621360 228 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AL008636.1-201ENST00000625038 1018 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AL157786.1-207ENST00000627771 695 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 MIR4496-201ENST00000635896 61 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AC135068.12-201ENST00000637370 931 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AL596275.2-204ENST00000641628 552 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 AL596275.2-206ENST00000641957 626 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 SAMMSON-227ENST00000642114 1199 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 C4BPAP1-201ENST00000415474 1893 ntBASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
TRIM39Q9HCM9 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AC008758.3-201ENST00000507003 1829 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AC008033.1-201ENST00000216407 1162 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 RNA5SP258-201ENST00000362750 119 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 RNU6-97P-201ENST00000363387 104 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 RNA5SP90-201ENST00000364801 99 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 RNU6-1283P-201ENST00000365314 105 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 Y_RNA.554-201ENST00000384672 102 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 FCF1P1-201ENST00000432690 571 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 RPS29P10-201ENST00000439197 166 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AC108734.1-201ENST00000439549 399 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 OR7E125P-201ENST00000443450 846 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 CBX1P2-201ENST00000453841 458 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AC005532.2-201ENST00000467154 373 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 RPL23AP41-201ENST00000484754 458 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AC010342.1-201ENST00000514047 877 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AP003122.4-201ENST00000530980 758 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 SETP2-201ENST00000553886 926 ntBASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.18□□□□□ -1.58
TRIM39Q9HCM9 AL590282.1-201ENST00000610379 1136 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms