Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL159972.1-201ENST00000625150 448 ntBASIC5.32□□□□□ -1.56
RNF4P78317 SNORA17.5-201ENST00000630429 132 ntBASIC5.32□□□□□ -1.56
RNF4P78317 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
RNF4P78317 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
RNF4P78317 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.32□□□□□ -1.56
RNF4P78317 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
RNF4P78317 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
RNF4P78317 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.31□□□□□ -1.56
RNF4P78317 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
RNF4P78317 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
RNF4P78317 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
RNF4P78317 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
RNF4P78317 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
RNF4P78317 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.31□□□□□ -1.56
RNF4P78317 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.31□□□□□ -1.56
RNF4P78317 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.31□□□□□ -1.56
RNF4P78317 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
RNF4P78317 Y_RNA.132-201ENST00000363421 102 ntBASIC5.31□□□□□ -1.56
RNF4P78317 RNU1-146P-201ENST00000364015 165 ntBASIC5.31□□□□□ -1.56
RNF4P78317 RNU6-996P-201ENST00000365438 107 ntBASIC5.31□□□□□ -1.56
RNF4P78317 SNORD37.1-201ENST00000390968 65 ntBASIC5.31□□□□□ -1.56
RNF4P78317 SSXP10-201ENST00000402595 565 ntBASIC5.31□□□□□ -1.56
RNF4P78317 TXNP7-201ENST00000406296 293 ntBASIC5.31□□□□□ -1.56
RNF4P78317 RNA5SP178-201ENST00000410380 128 ntBASIC5.31□□□□□ -1.56
RNF4P78317 OR2AT2P-201ENST00000413438 905 ntBASIC5.31□□□□□ -1.56
RNF4P78317 NDUFB4P5-201ENST00000415445 361 ntBASIC5.31□□□□□ -1.56
RNF4P78317 MTCYBP8-201ENST00000422855 651 ntBASIC5.31□□□□□ -1.56
RNF4P78317 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.31□□□□□ -1.56
RNF4P78317 MTCYBP6-201ENST00000441810 138 ntBASIC5.31□□□□□ -1.56
RNF4P78317 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC5.31□□□□□ -1.56
RNF4P78317 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC5.31□□□□□ -1.56
RNF4P78317 NIPA2P5-201ENST00000452282 464 ntBASIC5.31□□□□□ -1.56
RNF4P78317 RPS23P2-201ENST00000463671 415 ntBASIC5.31□□□□□ -1.56
RNF4P78317 MRPS17P3-201ENST00000465453 385 ntBASIC5.31□□□□□ -1.56
RNF4P78317 RPL5P22-201ENST00000480199 884 ntBASIC5.31□□□□□ -1.56
RNF4P78317 RPL38P4-201ENST00000502376 214 ntBASIC5.31□□□□□ -1.56
RNF4P78317 MTND5P5-201ENST00000503764 376 ntBASIC5.31□□□□□ -1.56
RNF4P78317 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC5.31□□□□□ -1.56
RNF4P78317 TMEM248P1-201ENST00000510579 951 ntBASIC5.31□□□□□ -1.56
RNF4P78317 AC104057.1-201ENST00000515547 497 ntBASIC5.31□□□□□ -1.56
RNF4P78317 RNU6-615P-201ENST00000516065 106 ntBASIC5.31□□□□□ -1.56
RNF4P78317 RNU6-1314P-201ENST00000517139 104 ntBASIC5.31□□□□□ -1.56
RNF4P78317 SNORA43.3-201ENST00000517240 103 ntBASIC5.31□□□□□ -1.56
RNF4P78317 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.31□□□□□ -1.56
RNF4P78317 OR4P1P-201ENST00000530808 1136 ntBASIC5.31□□□□□ -1.56
RNF4P78317 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC5.31□□□□□ -1.56
RNF4P78317 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC5.31□□□□□ -1.56
RNF4P78317 AC126615.2-201ENST00000553003 515 ntBASIC5.31□□□□□ -1.56
RNF4P78317 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.31□□□□□ -1.56
RNF4P78317 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.31□□□□□ -1.56
RNF4P78317 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
RNF4P78317 AC010547.6-201ENST00000571789 193 ntBASIC5.31□□□□□ -1.56
RNF4P78317 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.31□□□□□ -1.56
RNF4P78317 NF1P5-201ENST00000588287 448 ntBASIC5.31□□□□□ -1.56
RNF4P78317 AL513327.3-201ENST00000602618 469 ntBASIC5.31□□□□□ -1.56
RNF4P78317 AC087763.1-201ENST00000603391 286 ntBASIC5.31□□□□□ -1.56
RNF4P78317 AC005191.1-201ENST00000603950 358 ntBASIC5.31□□□□□ -1.56
RNF4P78317 AL133481.2-203ENST00000607558 139 ntBASIC5.31□□□□□ -1.56
RNF4P78317 AC090607.5-201ENST00000615692 224 ntBASIC5.31□□□□□ -1.56
RNF4P78317 AC002550.2-201ENST00000621246 394 ntBASIC5.31□□□□□ -1.56
RNF4P78317 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.31□□□□□ -1.56
RNF4P78317 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.31□□□□□ -1.56
RNF4P78317 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
RNF4P78317 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
RNF4P78317 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.31□□□□□ -1.56
RNF4P78317 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
RNF4P78317 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.31□□□□□ -1.56
RNF4P78317 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
RNF4P78317 MTND4P35-201ENST00000604257 1375 ntBASIC5.3□□□□□ -1.56
RNF4P78317 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
RNF4P78317 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.3□□□□□ -1.56
RNF4P78317 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
RNF4P78317 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
RNF4P78317 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
RNF4P78317 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
RNF4P78317 MTCO1P11-201ENST00000429111 1528 ntBASIC5.3□□□□□ -1.56
RNF4P78317 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.3□□□□□ -1.56
RNF4P78317 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
RNF4P78317 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.3□□□□□ -1.56
RNF4P78317 AC239868.2-201ENST00000564237 4527 ntBASIC5.3□□□□□ -1.56
RNF4P78317 RNA5SP46-201ENST00000362370 120 ntBASIC5.3□□□□□ -1.56
RNF4P78317 RNU6-39P-201ENST00000384344 107 ntBASIC5.3□□□□□ -1.56
RNF4P78317 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
RNF4P78317 U3.20-201ENST00000390909 217 ntBASIC5.3□□□□□ -1.56
RNF4P78317 NPM1P40-201ENST00000412758 733 ntBASIC5.3□□□□□ -1.56
RNF4P78317 MTND3P8-201ENST00000412909 339 ntBASIC5.3□□□□□ -1.56
RNF4P78317 NAP1L1P2-201ENST00000414182 1089 ntBASIC5.3□□□□□ -1.56
RNF4P78317 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.3□□□□□ -1.56
RNF4P78317 MTND2P23-201ENST00000422990 651 ntBASIC5.3□□□□□ -1.56
RNF4P78317 AL662874.1-201ENST00000426065 230 ntBASIC5.3□□□□□ -1.56
RNF4P78317 KCTD9P3-201ENST00000434597 1169 ntBASIC5.3□□□□□ -1.56
RNF4P78317 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
RNF4P78317 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.3□□□□□ -1.56
RNF4P78317 FTH1P1-201ENST00000437933 532 ntBASIC5.3□□□□□ -1.56
RNF4P78317 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.3□□□□□ -1.56
RNF4P78317 MEMO1P4-201ENST00000453590 386 ntBASIC5.3□□□□□ -1.56
RNF4P78317 RN7SL188P-201ENST00000469842 285 ntBASIC5.3□□□□□ -1.56
RNF4P78317 RN7SL273P-201ENST00000481561 299 ntBASIC5.3□□□□□ -1.56
RNF4P78317 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC5.3□□□□□ -1.56
RNF4P78317 AL163973.1-201ENST00000484753 577 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 217 ms