Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC093752.1-206ENST00000511823 336 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXC9P31274 AC006518.2-201ENST00000542513 940 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 AC095057.3-201ENST00000567102 1157 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 AC023824.3-201ENST00000569003 562 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 MTND1P8-201ENST00000571424 950 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 AC012493.2-201ENST00000595083 291 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC4.69□□□□□ -1.66
HOXC9P31274 AL353600.1-201ENST00000608148 251 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXC9P31274 AC068787.1-201ENST00000623908 691 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
HOXC9P31274 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXC9P31274 AC073055.1-201ENST00000456901 1621 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC9P31274 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC9P31274 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXC9P31274 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC9P31274 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC9P31274 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC9P31274 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC9P31274 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
HOXC9P31274 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
HOXC9P31274 RNU6-178P-201ENST00000384631 104 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXC9P31274 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC9P31274 TAF13P2-201ENST00000416876 286 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 OR1AA1P-201ENST00000419597 916 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC9P31274 RPF2P1-201ENST00000424137 906 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXC9P31274 AC092809.1-201ENST00000441469 474 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 RPS26P30-201ENST00000443431 335 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 TPTE2P6-202ENST00000445572 1007 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 AC068135.1-201ENST00000446164 246 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC9P31274 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC9P31274 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC9P31274 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXC9P31274 AC017015.1-201ENST00000477387 286 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXC9P31274 AC023050.1-201ENST00000498198 304 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXC9P31274 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXC9P31274 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC9P31274 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.68□□□□□ -1.66
HOXC9P31274 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC9P31274 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC9P31274 GMPSP1-201ENST00000514075 579 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 AP001207.2-201ENST00000519490 539 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 MTND2P32-201ENST00000521584 1038 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC4.68□□□□□ -1.66
HOXC9P31274 AC107918.3-201ENST00000533272 382 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.68□□□□□ -1.66
HOXC9P31274 MTND1P24-201ENST00000552175 861 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 GTF2IP8-201ENST00000560687 584 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 CYP2C60P-201ENST00000566088 139 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXC9P31274 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXC9P31274 AC013468.1-201ENST00000608680 598 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 MIR7973-1-201ENST00000614683 76 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 AL078595.3-201ENST00000623815 1166 ntBASIC4.68□□□□□ -1.66
HOXC9P31274 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.68□□□□□ -1.66
HOXC9P31274 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC9P31274 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.68□□□□□ -1.66
HOXC9P31274 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC9P31274 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
HOXC9P31274 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC9P31274 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC9P31274 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
HOXC9P31274 AL645937.1-201ENST00000641739 1652 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC9P31274 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC9P31274 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC9P31274 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC9P31274 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC9P31274 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC9P31274 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
HOXC9P31274 BMS1P3-201ENST00000372011 932 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 MIR128-1-201ENST00000384921 82 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 U3.39-201ENST00000408569 239 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 RN7SKP111-201ENST00000410349 271 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC9P31274 USP9YP21-201ENST00000420603 432 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXC9P31274 AC005002.1-201ENST00000447458 540 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 RPL7L1P1-201ENST00000448259 785 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXC9P31274 MTND6P6-201ENST00000478031 263 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 RPL21P13-201ENST00000488305 481 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXC9P31274 AC004069.2-201ENST00000505438 1114 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXC9P31274 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXC9P31274 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXC9P31274 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXC9P31274 RNU6-1028P-201ENST00000517164 93 ntBASIC4.67□□□□□ -1.66
HOXC9P31274 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXC9P31274 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXC9P31274 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms