Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC058791.1-201ENST00000608412 3198 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
HLA-DMBP28068 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HLA-DMBP28068 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HLA-DMBP28068 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 RNA5SP119-201ENST00000362715 117 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 RNU6-356P-201ENST00000384140 107 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 SKINT1L-201ENST00000401057 817 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 HNRNPDP2-201ENST00000406475 478 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 ATP5A1P2-201ENST00000412323 255 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 CRYBB2P1-203ENST00000415709 538 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 SYF2P2-201ENST00000417620 583 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC006946.1-201ENST00000429106 328 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 PRSS3P4-201ENST00000453323 162 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC007967.1-201ENST00000455422 1159 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 RN7SL594P-201ENST00000470590 287 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC017007.3-201ENST00000479865 435 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HLA-DMBP28068 PTGES3P3-201ENST00000511479 482 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 SNORA70.19-201ENST00000516717 90 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 SOD1P3-201ENST00000518682 454 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 RANP9-201ENST00000519957 271 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC023158.1-201ENST00000561632 1025 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC037471.2-201ENST00000564941 598 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC2.62□□□□□ -1.99
HLA-DMBP28068 AC121761.2-201ENST00000617300 689 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 AP003355.3-201ENST00000623465 114 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC2.62□□□□□ -1.99
HLA-DMBP28068 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HLA-DMBP28068 MTND5P27-201ENST00000428871 1720 ntBASIC2.62□□□□□ -1.99
HLA-DMBP28068 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HLA-DMBP28068 MTND5P3-201ENST00000438536 1800 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
HLA-DMBP28068 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
HLA-DMBP28068 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
HLA-DMBP28068 ESD-201ENST00000378697 1079 ntTSL 5 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC105402.1-201ENST00000413336 545 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 Z99755.1-201ENST00000414048 380 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 AL606490.7-201ENST00000433136 191 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 RPL6P5-201ENST00000445678 828 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
HLA-DMBP28068 RNF148-202ENST00000447240 839 ntTSL 2 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC125238.1-201ENST00000448842 249 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 SNORD105B-201ENST00000458770 79 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 RN7SL442P-201ENST00000473804 320 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC021146.5-201ENST00000503544 545 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 TMEM248P1-201ENST00000510579 951 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 SNORA70.17-201ENST00000516449 133 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 RNA5SP380-201ENST00000517190 98 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 AP002812.4-201ENST00000532139 286 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC006518.1-201ENST00000541449 943 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 RN7SL339P-201ENST00000580597 296 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC010928.3-201ENST00000587712 541 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC092354.2-201ENST00000607786 514 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC069200.1-201ENST00000609511 323 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 MTCO1P12-201ENST00000414273 1543 ntBASIC2.61□□□□□ -1.99
HLA-DMBP28068 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
HLA-DMBP28068 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.61□□□□□ -1.99
HLA-DMBP28068 AC022031.1-201ENST00000585985 2593 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AL049737.1-201ENST00000413920 1403 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AL157700.1-201ENST00000561973 1432 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC2.6□□□□□ -1.99
HLA-DMBP28068 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC2.6□□□□□ -1.99
HLA-DMBP28068 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HLA-DMBP28068 SNORA63.1-201ENST00000362493 131 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 RNA5SP197-201ENST00000363357 119 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 RNA5SP391-201ENST00000363456 119 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 SNORD46.1-201ENST00000364139 104 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HLA-DMBP28068 RNA5SP293-201ENST00000410527 113 ntBASIC2.6□□□□□ -1.99
HLA-DMBP28068 AC093578.1-201ENST00000415219 368 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms