Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC108471.1-201ENST00000513977 287 ntBASIC5.11□□□□□ -1.59
HLA-DOAP06340 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-DOAP06340 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC5.11□□□□□ -1.59
HLA-DOAP06340 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.11□□□□□ -1.59
HLA-DOAP06340 AL161729.3-201ENST00000603533 673 ntBASIC5.11□□□□□ -1.59
HLA-DOAP06340 MTCYBP22-201ENST00000603788 447 ntBASIC5.11□□□□□ -1.59
HLA-DOAP06340 AC126118.1-201ENST00000607744 628 ntBASIC5.11□□□□□ -1.59
HLA-DOAP06340 AL513477.2-201ENST00000607858 568 ntBASIC5.11□□□□□ -1.59
HLA-DOAP06340 AP001596.2-201ENST00000608410 312 ntBASIC5.11□□□□□ -1.59
HLA-DOAP06340 AC024941.1-201ENST00000612250 334 ntBASIC5.11□□□□□ -1.59
HLA-DOAP06340 AC025594.3-201ENST00000613068 790 ntBASIC5.11□□□□□ -1.59
HLA-DOAP06340 AL353726.1-201ENST00000614041 1000 ntBASIC5.11□□□□□ -1.59
HLA-DOAP06340 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DOAP06340 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-DOAP06340 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-DOAP06340 AC244258.1-201ENST00000637553 1071 ntBASIC5.11□□□□□ -1.59
HLA-DOAP06340 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DOAP06340 ATP8A2P3-201ENST00000426792 1536 ntBASIC5.11□□□□□ -1.59
HLA-DOAP06340 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DOAP06340 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DOAP06340 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
HLA-DOAP06340 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-DOAP06340 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
HLA-DOAP06340 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-DOAP06340 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC104260.2-201ENST00000623551 3497 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DOAP06340 SNORA4.1-201ENST00000364263 144 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 RNU6-660P-201ENST00000364566 109 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 RNU1-13P-201ENST00000384499 162 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 MIR548F1-201ENST00000408667 84 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 RNU2-66P-201ENST00000410650 161 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 RNU2-42P-201ENST00000410697 113 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 TPT1P2-201ENST00000413105 503 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 COX6B1P7-201ENST00000430845 235 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 AL139415.2-201ENST00000431968 163 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 OR4C10P-201ENST00000434991 931 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 HSFY6P-201ENST00000445573 403 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 MTCO2P25-201ENST00000447065 681 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 ST13P20-201ENST00000447996 1065 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AL591363.1-201ENST00000450091 483 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 RPS4XP12-201ENST00000461747 709 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 RPL5P24-201ENST00000463742 885 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC104685.1-201ENST00000502445 371 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-DOAP06340 RPL37P25-201ENST00000507308 276 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC109471.1-201ENST00000511631 612 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC026402.1-201ENST00000513642 170 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 RNU6-405P-201ENST00000516637 110 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 GTF2IP22-201ENST00000554443 182 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC015871.2-201ENST00000603605 948 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC009220.3-201ENST00000604318 586 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC010201.1-201ENST00000605051 540 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC092354.1-201ENST00000606057 376 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC069234.5-201ENST00000611056 416 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 AL445363.3-201ENST00000623080 671 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.1□□□□□ -1.59
HLA-DOAP06340 ATE1-AS1-202ENST00000636460 506 ntBASIC5.1□□□□□ -1.59
HLA-DOAP06340 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DOAP06340 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DOAP06340 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 SPRR2C-201ENST00000290702 219 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.09□□□□□ -1.59
HLA-DOAP06340 RNU1-44P-201ENST00000384453 163 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 SNORA11-201ENST00000408789 128 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 MTND1P21-201ENST00000412991 285 ntBASIC5.09□□□□□ -1.59
HLA-DOAP06340 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC5.09□□□□□ -1.59
HLA-DOAP06340 RPL34P6-201ENST00000432390 345 ntBASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms