Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 TSPY6P-201ENST00000448518 926 ntBASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 SLC7A5P2-201ENST00000553010 536 ntBASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 AC142086.2-201ENST00000569753 217 ntBASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 AC090164.3-201ENST00000610780 2143 ntBASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ZNF540Q8NDQ6 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 KRT16P6-202ENST00000425692 1426 ntBASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 PGM5P4-201ENST00000421970 445 ntBASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 AF201337.1-201ENST00000520239 748 ntBASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 AC133552.2-202ENST00000575694 574 ntBASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.81■□□□□ 0.44
ZNF540Q8NDQ6 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 KRT8P17-201ENST00000453110 1448 ntBASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
ZNF540Q8NDQ6 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 TERF1P5-201ENST00000477545 1207 ntBASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 AL356652.1-201ENST00000615962 565 ntBASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF540Q8NDQ6 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms