Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
PRKDCP78527 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PRKDCP78527 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC13.98□□□□□ -0.17
PRKDCP78527 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC13.98□□□□□ -0.17
PRKDCP78527 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
PRKDCP78527 FAM8A3P-201ENST00000427218 844 ntBASIC13.98□□□□□ -0.17
PRKDCP78527 AC018712.1-201ENST00000455767 687 ntBASIC13.98□□□□□ -0.17
PRKDCP78527 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
PRKDCP78527 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
PRKDCP78527 AL117328.2-201ENST00000624617 1940 ntBASIC13.98□□□□□ -0.17
PRKDCP78527 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
PRKDCP78527 IGHV3-47-201ENST00000425060 335 ntBASIC13.98□□□□□ -0.17
PRKDCP78527 RPS15-207ENST00000591032 550 ntTSL 3 BASIC13.98□□□□□ -0.17
PRKDCP78527 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
PRKDCP78527 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
PRKDCP78527 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
PRKDCP78527 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC13.97□□□□□ -0.17
PRKDCP78527 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.97□□□□□ -0.17
PRKDCP78527 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
PRKDCP78527 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC13.97□□□□□ -0.17
PRKDCP78527 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC13.97□□□□□ -0.17
PRKDCP78527 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC13.97□□□□□ -0.17
PRKDCP78527 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 AC244107.1-201ENST00000442033 332 ntBASIC13.97□□□□□ -0.17
PRKDCP78527 CCDC74BP1-201ENST00000508880 1123 ntBASIC13.97□□□□□ -0.17
PRKDCP78527 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC13.97□□□□□ -0.17
PRKDCP78527 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PRKDCP78527 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC13.97□□□□□ -0.17
PRKDCP78527 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC13.96□□□□□ -0.17
PRKDCP78527 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC13.96□□□□□ -0.17
PRKDCP78527 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC13.96□□□□□ -0.17
PRKDCP78527 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC13.96□□□□□ -0.17
PRKDCP78527 AL049840.3-201ENST00000602669 611 ntBASIC13.96□□□□□ -0.17
PRKDCP78527 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PRKDCP78527 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
PRKDCP78527 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PRKDCP78527 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
PRKDCP78527 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
PRKDCP78527 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PRKDCP78527 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC13.96□□□□□ -0.17
PRKDCP78527 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
PRKDCP78527 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PRKDCP78527 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PRKDCP78527 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC13.96□□□□□ -0.17
PRKDCP78527 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.96□□□□□ -0.17
PRKDCP78527 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.96□□□□□ -0.17
PRKDCP78527 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC13.96□□□□□ -0.17
PRKDCP78527 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC13.96□□□□□ -0.17
PRKDCP78527 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
PRKDCP78527 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC13.96□□□□□ -0.17
PRKDCP78527 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
PRKDCP78527 DNAJB3-202ENST00000449667 1266 ntBASIC13.96□□□□□ -0.17
PRKDCP78527 AC004967.1-201ENST00000453589 447 ntBASIC13.96□□□□□ -0.17
PRKDCP78527 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
PRKDCP78527 LITAF-211ENST00000572255 516 ntTSL 4 BASIC13.96□□□□□ -0.17
PRKDCP78527 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
PRKDCP78527 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
PRKDCP78527 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
PRKDCP78527 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC13.96□□□□□ -0.18
PRKDCP78527 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
PRKDCP78527 TMEM179-206ENST00000616017 1645 ntBASIC13.96□□□□□ -0.18
PRKDCP78527 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
PRKDCP78527 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
PRKDCP78527 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC13.96□□□□□ -0.18
PRKDCP78527 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
PRKDCP78527 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC13.96□□□□□ -0.18
PRKDCP78527 SART3-203ENST00000546611 1184 ntBASIC13.96□□□□□ -0.18
PRKDCP78527 TPM1-218ENST00000559281 851 ntTSL 5 BASIC13.96□□□□□ -0.18
PRKDCP78527 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC13.96□□□□□ -0.18
PRKDCP78527 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC13.96□□□□□ -0.18
PRKDCP78527 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
PRKDCP78527 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PRKDCP78527 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PRKDCP78527 FAM197Y8-203ENST00000450145 560 ntBASIC13.95□□□□□ -0.18
PRKDCP78527 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PRKDCP78527 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
PRKDCP78527 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
PRKDCP78527 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PRKDCP78527 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PRKDCP78527 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC13.95□□□□□ -0.18
PRKDCP78527 AC024243.1-201ENST00000609234 778 ntBASIC13.95□□□□□ -0.18
PRKDCP78527 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PRKDCP78527 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC13.95□□□□□ -0.18
PRKDCP78527 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC13.95□□□□□ -0.18
PRKDCP78527 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PRKDCP78527 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13.95□□□□□ -0.18
PRKDCP78527 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms