Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC22.34■■□□□ 1.17
CTCFP49711 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC22.34■■□□□ 1.17
CTCFP49711 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC22.34■■□□□ 1.17
CTCFP49711 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC22.34■■□□□ 1.17
CTCFP49711 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
CTCFP49711 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC22.34■■□□□ 1.17
CTCFP49711 AL137060.1-201ENST00000618151 2648 ntBASIC22.34■■□□□ 1.17
CTCFP49711 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CTCFP49711 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CTCFP49711 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
CTCFP49711 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CTCFP49711 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CTCFP49711 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC22.33■■□□□ 1.17
CTCFP49711 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC22.33■■□□□ 1.17
CTCFP49711 HTR5BP-201ENST00000430851 1154 ntBASIC22.33■■□□□ 1.17
CTCFP49711 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
CTCFP49711 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC22.33■■□□□ 1.17
CTCFP49711 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CTCFP49711 ABBA01031661.1-201ENST00000634362 1253 ntBASIC22.33■■□□□ 1.17
CTCFP49711 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC22.33■■□□□ 1.17
CTCFP49711 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
CTCFP49711 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
CTCFP49711 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
CTCFP49711 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
CTCFP49711 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
CTCFP49711 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
CTCFP49711 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CTCFP49711 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CTCFP49711 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CTCFP49711 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC22.32■■□□□ 1.16
CTCFP49711 MIR940-201ENST00000401276 94 ntBASIC22.32■■□□□ 1.16
CTCFP49711 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC22.32■■□□□ 1.16
CTCFP49711 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC22.32■■□□□ 1.16
CTCFP49711 AC055717.3-201ENST00000622967 595 ntBASIC22.32■■□□□ 1.16
CTCFP49711 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
CTCFP49711 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC22.32■■□□□ 1.16
CTCFP49711 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC22.32■■□□□ 1.16
CTCFP49711 TFP1-202ENST00000475455 1573 ntBASIC22.32■■□□□ 1.16
CTCFP49711 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC22.32■■□□□ 1.16
CTCFP49711 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CTCFP49711 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
CTCFP49711 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
CTCFP49711 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC22.31■■□□□ 1.16
CTCFP49711 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
CTCFP49711 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTCFP49711 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTCFP49711 AC116351.2-201ENST00000606540 1585 ntBASIC22.31■■□□□ 1.16
CTCFP49711 AC093525.10-201ENST00000625130 1569 ntBASIC22.31■■□□□ 1.16
CTCFP49711 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTCFP49711 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTCFP49711 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC22.31■■□□□ 1.16
CTCFP49711 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC22.31■■□□□ 1.16
CTCFP49711 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC22.31■■□□□ 1.16
CTCFP49711 AL773604.1-201ENST00000617417 272 ntBASIC22.31■■□□□ 1.16
CTCFP49711 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC22.31■■□□□ 1.16
CTCFP49711 MIR2861-201ENST00000636310 90 ntBASIC22.31■■□□□ 1.16
CTCFP49711 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CTCFP49711 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC22.31■■□□□ 1.16
CTCFP49711 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC22.31■■□□□ 1.16
CTCFP49711 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC22.31■■□□□ 1.16
CTCFP49711 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTCFP49711 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CTCFP49711 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC22.31■■□□□ 1.16
CTCFP49711 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC22.3■■□□□ 1.16
CTCFP49711 GOLGA6L3-201ENST00000507199 1679 ntBASIC22.3■■□□□ 1.16
CTCFP49711 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
CTCFP49711 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CTCFP49711 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CTCFP49711 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CTCFP49711 TOB2P1-201ENST00000469761 992 ntBASIC22.3■■□□□ 1.16
CTCFP49711 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC22.3■■□□□ 1.16
CTCFP49711 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC22.3■■□□□ 1.16
CTCFP49711 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC22.3■■□□□ 1.16
CTCFP49711 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CTCFP49711 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CTCFP49711 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CTCFP49711 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CTCFP49711 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
CTCFP49711 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
CTCFP49711 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CTCFP49711 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CTCFP49711 AC011484.1-201ENST00000377652 1995 ntBASIC22.29■■□□□ 1.16
CTCFP49711 FAM99A-202ENST00000538190 1989 ntBASIC22.29■■□□□ 1.16
CTCFP49711 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
CTCFP49711 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC22.29■■□□□ 1.16
CTCFP49711 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC22.29■■□□□ 1.16
CTCFP49711 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC22.29■■□□□ 1.16
CTCFP49711 AL121603.2-201ENST00000557373 2117 ntBASIC22.29■■□□□ 1.16
CTCFP49711 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CTCFP49711 AP001160.2-201ENST00000596071 487 ntBASIC22.29■■□□□ 1.16
CTCFP49711 AC138894.3-201ENST00000603787 634 ntBASIC22.29■■□□□ 1.16
CTCFP49711 AL390719.2-201ENST00000606993 987 ntBASIC22.29■■□□□ 1.16
CTCFP49711 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CTCFP49711 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC22.29■■□□□ 1.16
CTCFP49711 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CTCFP49711 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CTCFP49711 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
CTCFP49711 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CTCFP49711 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CTCFP49711 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms