Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PRDX3P3-201ENST00000447765 522 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC233982.1-201ENST00000451247 436 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AL049830.2-201ENST00000480072 201 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC073522.1-201ENST00000483312 377 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC008885.2-201ENST00000509506 930 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 HIGD1AP10-201ENST00000527837 282 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC027104.1-201ENST00000563702 681 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 MIR3690-201ENST00000580266 75 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 Z82195.1-201ENST00000604558 398 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 U3.45-201ENST00000607547 219 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 MIR8058-201ENST00000615737 89 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC018926.3-201ENST00000618841 406 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 XIST_intron.1-201ENST00000619444 68 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC024595.1-201ENST00000623088 387 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC090617.9-201ENST00000623751 147 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC017104.5-201ENST00000637647 639 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 OR5T3-201ENST00000303059 1023 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 RNU1-18P-201ENST00000363062 164 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 MIR183-201ENST00000384958 110 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 MIR199A2-201ENST00000385289 110 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 DSTNP4-201ENST00000399472 474 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AC092745.2-202ENST00000411880 369 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 TCEA1P2-201ENST00000420496 906 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 KCTD9P3-201ENST00000434597 1169 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 SETP5-201ENST00000437270 562 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 HMGB1P37-201ENST00000439613 609 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AL662791.1-201ENST00000441992 928 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AC004865.1-201ENST00000442276 1003 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AC010307.1-201ENST00000467206 836 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AC106707.2-201ENST00000484182 374 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 HMGB1P38-201ENST00000490557 577 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AC016065.2-201ENST00000514530 444 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 RNA5SP164-201ENST00000516533 110 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 MTCYBP28-201ENST00000566728 1132 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AC091488.1-201ENST00000604239 660 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AC096577.2-201ENST00000611455 153 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AC104820.1-201ENST00000624183 307 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AC092184.1-201ENST00000625042 715 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 UBE3AP2-201ENST00000429033 2259 ntBASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.79□□□□□ -1.8
TM9SF3Q9HD45 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC107081.3-201ENST00000612715 2034 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC116096.1-201ENST00000566804 2314 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC091152.2-201ENST00000591628 2569 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 AC104446.1-201ENST00000613728 1321 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 SAGE4P-201ENST00000442271 3381 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 RNU6-525P-201ENST00000363685 104 ntBASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
TM9SF3Q9HD45 RNU6-1181P-201ENST00000384191 106 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms