Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 AL157884.3-201ENST00000448273 1184 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 AC091179.1-201ENST00000461606 579 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 AC021678.1-201ENST00000505195 936 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 OR4A2P-201ENST00000527276 913 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC42Q96M95 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 AC084824.1-201ENST00000550917 1005 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 AP003117.1-201ENST00000602771 554 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 MTCO2P22-201ENST00000603246 681 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 LLPHP1-201ENST00000603571 367 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 AC005156.1-201ENST00000613371 573 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 uc_338.25-201ENST00000613756 156 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC42Q96M95 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC42Q96M95 Z83843.1-201ENST00000604070 3685 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 CNOT6LP1-201ENST00000559681 1462 ntBASIC3.41□□□□□ -1.86
CCDC42Q96M95 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC42Q96M95 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 AC004022.2-201ENST00000413824 193 ntBASIC3.41□□□□□ -1.86
CCDC42Q96M95 HSFY4P-201ENST00000415994 1181 ntBASIC3.41□□□□□ -1.86
CCDC42Q96M95 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 RPS12P18-201ENST00000442381 270 ntBASIC3.41□□□□□ -1.86
CCDC42Q96M95 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 RPL30P11-201ENST00000495304 339 ntBASIC3.41□□□□□ -1.86
CCDC42Q96M95 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 AC008083.2-201ENST00000546707 476 ntBASIC3.41□□□□□ -1.86
CCDC42Q96M95 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 AC073657.2-201ENST00000605661 303 ntBASIC3.41□□□□□ -1.86
CCDC42Q96M95 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC42Q96M95 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC42Q96M95 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC42Q96M95 RNU6-666P-201ENST00000363499 107 ntBASIC3.4□□□□□ -1.87
CCDC42Q96M95 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.4□□□□□ -1.87
CCDC42Q96M95 NDUFB4P5-201ENST00000415445 361 ntBASIC3.4□□□□□ -1.87
CCDC42Q96M95 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC42Q96M95 DPPA2P1-201ENST00000428060 556 ntBASIC3.4□□□□□ -1.87
CCDC42Q96M95 AC009969.1-201ENST00000438726 172 ntBASIC3.4□□□□□ -1.87
CCDC42Q96M95 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 SLC31A1P1-201ENST00000451221 567 ntBASIC3.4□□□□□ -1.87
CCDC42Q96M95 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 AC108860.1-201ENST00000484521 383 ntBASIC3.4□□□□□ -1.87
CCDC42Q96M95 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 AP004242.1-201ENST00000533701 349 ntBASIC3.4□□□□□ -1.87
CCDC42Q96M95 MIR2682-201ENST00000580305 110 ntBASIC3.4□□□□□ -1.87
CCDC42Q96M95 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.4□□□□□ -1.87
CCDC42Q96M95 AC068831.8-201ENST00000620171 435 ntBASIC3.4□□□□□ -1.87
CCDC42Q96M95 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
CCDC42Q96M95 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC42Q96M95 AL353743.4-201ENST00000422653 1547 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 AC117529.2-201ENST00000512159 2068 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC42Q96M95 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC42Q96M95 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC42Q96M95 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.39□□□□□ -1.87
CCDC42Q96M95 MIR153-1-201ENST00000384914 90 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 SNORA57.1-201ENST00000391227 145 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 RN7SKP202-201ENST00000410439 330 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 Y_RNA.625-201ENST00000411256 107 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 RAB28P1-201ENST00000411517 641 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC42Q96M95 AC007563.3-201ENST00000433233 371 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 AC069540.1-201ENST00000446320 988 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 ELOCP23-201ENST00000452014 332 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 AC089999.1-201ENST00000460336 374 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
CCDC42Q96M95 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC42Q96M95 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 TRMT10BP1-201ENST00000519377 943 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 MTCO1P49-201ENST00000523429 802 ntBASIC3.39□□□□□ -1.87
CCDC42Q96M95 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC42Q96M95 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms