Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AC004062.1-201ENST00000509926 645 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 MTCYBP37-201ENST00000510642 1133 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 MTCO3P44-201ENST00000510977 541 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 MRPL49P2-201ENST00000521066 465 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AC011611.5-201ENST00000552477 578 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AL121603.1-201ENST00000553815 142 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 MIR3160-1-201ENST00000577972 85 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AL671309.1-201ENST00000603750 544 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AC090116.1-201ENST00000615679 446 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AC140479.6-201ENST00000633535 357 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 AC005261.4-201ENST00000600047 1385 ntBASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.74□□□□□ -1.81
ZNF540Q8NDQ6 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AC021755.1-201ENST00000559747 1447 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 MIR423-201ENST00000362201 94 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 RNU1-18P-201ENST00000363062 164 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 RNU6-921P-201ENST00000384361 107 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AL606495.1-201ENST00000422100 813 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AL365396.1-201ENST00000430854 671 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AL512326.1-201ENST00000443050 721 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 RPL36AP13-201ENST00000457490 317 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 PRELID3BP4-201ENST00000515476 571 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AP003730.1-201ENST00000524605 285 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AC090246.1-201ENST00000616499 426 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AL591424.2-201ENST00000617023 128 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AL445567.2-201ENST00000618935 498 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 AC068831.8-201ENST00000620171 435 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 OR52H1-202ENST00000641796 1061 ntBASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.73□□□□□ -1.81
ZNF540Q8NDQ6 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 MIR16-2-201ENST00000362117 81 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 RNA5SP258-201ENST00000362750 119 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 RNU6-792P-201ENST00000363490 107 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 RNU6-821P-201ENST00000390995 107 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AL158050.1-201ENST00000416077 457 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 KCTD9P3-201ENST00000434597 1169 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AC005002.1-201ENST00000447458 540 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 NUTF2P7-201ENST00000453086 375 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 U3.44-201ENST00000458938 192 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AC022034.3-201ENST00000471393 478 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AP000916.1-201ENST00000533869 835 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 RPL23AP87-202ENST00000573039 466 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 MIR3186-201ENST00000577404 85 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AC093227.2-201ENST00000589357 285 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 SNORA51-201ENST00000606420 132 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AC073968.1-201ENST00000618594 637 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AC018755.4-201ENST00000619715 454 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 AC244205.2-202ENST00000635781 342 ntBASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
ZNF540Q8NDQ6 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.71□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms