Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
USP39Q53GS9 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 AC099654.2-201ENST00000433031 1980 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.06□□□□□ -1.6
USP39Q53GS9 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 AL450345.1-202ENST00000605741 3881 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
USP39Q53GS9 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
USP39Q53GS9 RNU6-692P-201ENST00000384496 107 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 MT-TD-201ENST00000387419 68 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 AL034403.1-201ENST00000399414 885 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 MTCYBP36-201ENST00000404146 440 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 RPL17P12-201ENST00000413391 526 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AC092647.1-201ENST00000420654 287 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AL512649.1-201ENST00000428997 581 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AC012512.1-201ENST00000446594 718 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 AC245028.2-201ENST00000458673 253 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 snoU13.1-201ENST00000459157 104 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.06□□□□□ -1.6
USP39Q53GS9 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AC090013.1-201ENST00000485147 480 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 RPL7P24-201ENST00000493052 752 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 HMGN1P12-201ENST00000499125 195 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 AC019235.1-201ENST00000503847 207 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 AC097173.1-201ENST00000505862 819 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC5.06□□□□□ -1.6
USP39Q53GS9 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC5.06□□□□□ -1.6
USP39Q53GS9 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AC005498.1-201ENST00000592125 465 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AC055764.2-201ENST00000610089 670 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AL353726.1-201ENST00000614041 1000 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 AC120349.2-201ENST00000625002 298 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.06□□□□□ -1.6
USP39Q53GS9 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
USP39Q53GS9 AC104118.1-201ENST00000607625 1589 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 SAMMSON-226ENST00000642089 1582 ntBASIC5.06□□□□□ -1.6
USP39Q53GS9 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
USP39Q53GS9 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
USP39Q53GS9 AC092079.1-201ENST00000558620 1985 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC5.05□□□□□ -1.6
USP39Q53GS9 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
USP39Q53GS9 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
USP39Q53GS9 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
USP39Q53GS9 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
USP39Q53GS9 SPATA2P1-201ENST00000431223 2055 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
USP39Q53GS9 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
USP39Q53GS9 RPL21P132-201ENST00000331267 462 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
USP39Q53GS9 RNU6-433P-201ENST00000363216 104 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
USP39Q53GS9 CALM2P3-201ENST00000400429 449 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 AF186996.5-201ENST00000418098 904 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.05□□□□□ -1.6
USP39Q53GS9 BLOC1S2P1-201ENST00000428431 301 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC5.05□□□□□ -1.6
USP39Q53GS9 RPL31P54-201ENST00000429803 370 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
USP39Q53GS9 KCTD9P3-201ENST00000434597 1169 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC5.05□□□□□ -1.6
USP39Q53GS9 CYCSP11-201ENST00000436426 315 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 AC007677.1-201ENST00000445757 515 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 AC239367.2-201ENST00000447309 705 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 PTMAP3-201ENST00000447474 330 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 IGHV5-78-201ENST00000450948 295 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.05□□□□□ -1.6
USP39Q53GS9 RPS23P7-201ENST00000466210 444 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 NIFKP7-201ENST00000503365 834 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 MTCYBP17-201ENST00000503579 789 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 CDH12P2-201ENST00000504393 298 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
USP39Q53GS9 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC5.05□□□□□ -1.6
USP39Q53GS9 BTG4P1-201ENST00000510421 183 ntBASIC5.05□□□□□ -1.6
USP39Q53GS9 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.05□□□□□ -1.6
USP39Q53GS9 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms