Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 IGHV3-32-201ENST00000519182 355 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 AP001207.1-201ENST00000524051 481 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.48□□□□□ -1.69
HDAC4P56524 AC006064.5-201ENST00000541782 248 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
HDAC4P56524 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.48□□□□□ -1.69
HDAC4P56524 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC4.48□□□□□ -1.69
HDAC4P56524 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.48□□□□□ -1.69
HDAC4P56524 AC017100.2-201ENST00000584628 355 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.48□□□□□ -1.69
HDAC4P56524 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.48□□□□□ -1.69
HDAC4P56524 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC4.48□□□□□ -1.69
HDAC4P56524 AC008687.2-201ENST00000597865 520 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.48□□□□□ -1.69
HDAC4P56524 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.48□□□□□ -1.69
HDAC4P56524 AC080013.3-201ENST00000606839 578 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 AC097065.2-201ENST00000608159 533 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 AL450489.1-201ENST00000612071 468 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HDAC4P56524 AC023158.2-201ENST00000614876 543 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 AC022509.4-201ENST00000621404 572 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC4.48□□□□□ -1.69
HDAC4P56524 AF001550.2-201ENST00000636643 217 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 AC008013.2-202ENST00000637965 364 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HDAC4P56524 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.48□□□□□ -1.69
HDAC4P56524 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.48□□□□□ -1.69
HDAC4P56524 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.48□□□□□ -1.69
HDAC4P56524 ERCC6-202ENST00000374127 1782 ntBASIC4.48□□□□□ -1.69
HDAC4P56524 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.47□□□□□ -1.69
HDAC4P56524 AL158163.1-201ENST00000603915 1649 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
HDAC4P56524 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HDAC4P56524 Y_RNA.192-201ENST00000363977 102 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.47□□□□□ -1.69
HDAC4P56524 Y_RNA.408-201ENST00000383987 102 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 RNU6-1293P-201ENST00000384077 107 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 AL139098.1-201ENST00000407291 389 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 MIR1193-201ENST00000408109 78 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 MFSD13B-201ENST00000420133 1290 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.47□□□□□ -1.69
HDAC4P56524 RPS6P15-201ENST00000431996 751 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 AL132765.1-201ENST00000434165 553 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 RPS3AP54-201ENST00000435535 734 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 CBX1P1-201ENST00000440184 427 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 SETD6P1-201ENST00000444575 317 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 EXTL2P1-201ENST00000446218 416 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.47□□□□□ -1.69
HDAC4P56524 AL133477.1-201ENST00000457472 514 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 PNPLA4P1-201ENST00000458328 305 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.47□□□□□ -1.69
HDAC4P56524 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.47□□□□□ -1.69
HDAC4P56524 AC108145.1-201ENST00000503770 153 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC4.47□□□□□ -1.69
HDAC4P56524 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.47□□□□□ -1.69
HDAC4P56524 AC093755.1-201ENST00000512950 1023 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 RNU6-202P-201ENST00000515998 96 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.47□□□□□ -1.69
HDAC4P56524 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC4.47□□□□□ -1.69
HDAC4P56524 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC4.47□□□□□ -1.69
HDAC4P56524 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.47□□□□□ -1.69
HDAC4P56524 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HDAC4P56524 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.47□□□□□ -1.69
HDAC4P56524 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.47□□□□□ -1.69
HDAC4P56524 VN1R79P-201ENST00000593540 513 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 AC021171.1-201ENST00000603137 706 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 MRPS35P3-201ENST00000603189 709 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 DUXAP3-201ENST00000603616 594 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 AC010680.3-201ENST00000604215 520 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 RNU6-156P-201ENST00000621869 107 ntBASIC4.47□□□□□ -1.69
HDAC4P56524 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
HDAC4P56524 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
HDAC4P56524 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.46□□□□□ -1.69
HDAC4P56524 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.69
HDAC4P56524 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.46□□□□□ -1.69
HDAC4P56524 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.69
HDAC4P56524 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HDAC4P56524 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HDAC4P56524 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
HDAC4P56524 RNA5SP509-201ENST00000364577 119 ntBASIC4.46□□□□□ -1.7
HDAC4P56524 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.46□□□□□ -1.7
HDAC4P56524 SNORA48.7-201ENST00000391302 135 ntBASIC4.46□□□□□ -1.7
HDAC4P56524 AL161909.1-201ENST00000397390 712 ntBASIC4.46□□□□□ -1.7
HDAC4P56524 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC4.46□□□□□ -1.7
HDAC4P56524 AL049545.1-201ENST00000401856 572 ntBASIC4.46□□□□□ -1.7
HDAC4P56524 AL592293.2-201ENST00000422292 996 ntBASIC4.46□□□□□ -1.7
HDAC4P56524 EIF1P3-201ENST00000423841 334 ntBASIC4.46□□□□□ -1.7
HDAC4P56524 Z93242.1-201ENST00000427102 353 ntBASIC4.46□□□□□ -1.7
HDAC4P56524 NANOGP6-201ENST00000429190 847 ntBASIC4.46□□□□□ -1.7
HDAC4P56524 PRELID3BP10-201ENST00000431957 584 ntBASIC4.46□□□□□ -1.7
HDAC4P56524 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.46□□□□□ -1.7
HDAC4P56524 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.46□□□□□ -1.7
HDAC4P56524 AL512326.1-201ENST00000443050 721 ntBASIC4.46□□□□□ -1.7
HDAC4P56524 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC4.46□□□□□ -1.7
HDAC4P56524 Z99714.1-201ENST00000450463 807 ntBASIC4.46□□□□□ -1.7
HDAC4P56524 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.46□□□□□ -1.7
HDAC4P56524 RPS15AP1-201ENST00000457423 391 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms