Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXC9P31274 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXC9P31274 ENSAP3-201ENST00000312710 333 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HOXC9P31274 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
HOXC9P31274 SNORA48.2-201ENST00000390926 124 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 RPL7P27-201ENST00000403775 720 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 NCSTNP1-201ENST00000406229 144 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.71□□□□□ -1.66
HOXC9P31274 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC4.71□□□□□ -1.66
HOXC9P31274 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXC9P31274 YWHAEP5-201ENST00000431545 765 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXC9P31274 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXC9P31274 AC099063.2-201ENST00000446360 662 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXC9P31274 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXC9P31274 RPL5P24-201ENST00000463742 885 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 AC073522.1-201ENST00000483312 377 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 SCARNA13-201ENST00000516672 275 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 RNU6-579P-201ENST00000516879 102 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXC9P31274 AP001372.4-201ENST00000524889 472 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXC9P31274 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HOXC9P31274 AP002812.4-201ENST00000532139 286 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.71□□□□□ -1.66
HOXC9P31274 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.71□□□□□ -1.66
HOXC9P31274 MTCYBP23-201ENST00000558717 1102 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.71□□□□□ -1.66
HOXC9P31274 AC027104.1-201ENST00000563702 681 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 AC125494.3-201ENST00000602759 455 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 BRDTP1-201ENST00000605735 677 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 CYCSP41-201ENST00000616920 296 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 AC024595.1-201ENST00000623088 387 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 AP003355.3-201ENST00000623465 114 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 SEC63P2-201ENST00000503863 1939 ntBASIC4.71□□□□□ -1.66
HOXC9P31274 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
HOXC9P31274 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXC9P31274 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HOXC9P31274 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.71□□□□□ -1.66
HOXC9P31274 RNF6P1-201ENST00000444889 1784 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 ZNF833P-201ENST00000424938 1494 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
HOXC9P31274 AC027290.2-201ENST00000623210 18662 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
HOXC9P31274 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXC9P31274 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXC9P31274 ZNF29P-201ENST00000225587 168 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
HOXC9P31274 MIR93-201ENST00000385024 80 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 AL449283.1-202ENST00000418249 604 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXC9P31274 SEPT14P24-201ENST00000447236 180 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.7□□□□□ -1.66
HOXC9P31274 AC008565.1-201ENST00000509046 885 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 RFPL4AP5-201ENST00000514977 504 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 RNA5SP154-201ENST00000516193 111 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.7□□□□□ -1.66
HOXC9P31274 AC083923.1-201ENST00000523708 376 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC4.7□□□□□ -1.66
HOXC9P31274 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXC9P31274 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC4.7□□□□□ -1.66
HOXC9P31274 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXC9P31274 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC4.7□□□□□ -1.66
HOXC9P31274 AC006363.1-201ENST00000603806 463 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 STMN1P1-201ENST00000617809 440 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 U6.48-201ENST00000618523 106 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 MIR8057-201ENST00000620957 69 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXC9P31274 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.7□□□□□ -1.66
HOXC9P31274 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
HOXC9P31274 AC107027.3-201ENST00000565095 3473 ntBASIC4.7□□□□□ -1.66
HOXC9P31274 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXC9P31274 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXC9P31274 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXC9P31274 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
HOXC9P31274 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXC9P31274 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
HOXC9P31274 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
HOXC9P31274 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXC9P31274 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
HOXC9P31274 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
HOXC9P31274 SNORD74.4-201ENST00000364129 80 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 SNORA68.2-201ENST00000391263 128 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 JKAMPP1-201ENST00000413804 919 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXC9P31274 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.69□□□□□ -1.66
HOXC9P31274 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXC9P31274 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.69□□□□□ -1.66
HOXC9P31274 TRBV8-2-201ENST00000475637 270 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 RPS29P2-201ENST00000479278 136 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
HOXC9P31274 AC026414.1-201ENST00000504046 698 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC4.69□□□□□ -1.66
HOXC9P31274 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.69□□□□□ -1.66
HOXC9P31274 AC109458.1-201ENST00000508858 316 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 AC104108.1-201ENST00000509930 412 ntBASIC4.69□□□□□ -1.66
HOXC9P31274 AC010285.3-201ENST00000511668 676 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms