Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL5A3P25940 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC3.71□□□□□ -1.82
COL5A3P25940 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC3.7□□□□□ -1.82
COL5A3P25940 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A3P25940 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A3P25940 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
COL5A3P25940 AC110754.1-201ENST00000399740 601 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 AL139039.1-201ENST00000401900 692 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 Z98941.1-201ENST00000407764 100 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.7□□□□□ -1.82
COL5A3P25940 AC010401.1-201ENST00000463867 348 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 RPL31P13-201ENST00000484151 370 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 AL035404.1-201ENST00000497982 568 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 RNU4-29P-201ENST00000515943 174 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.7□□□□□ -1.82
COL5A3P25940 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.7□□□□□ -1.82
COL5A3P25940 TUG1_1.1-201ENST00000610654 145 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A3P25940 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.7□□□□□ -1.82
COL5A3P25940 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A3P25940 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A3P25940 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.7□□□□□ -1.82
COL5A3P25940 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
COL5A3P25940 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A3P25940 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
COL5A3P25940 RNU1-112P-201ENST00000364401 164 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.7□□□□□ -1.82
COL5A3P25940 GCNT6-201ENST00000379591 934 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 RNA5SP21-201ENST00000410917 96 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 GOLGA5P1-201ENST00000507317 980 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 AC068722.2-201ENST00000618734 544 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 AC243829.7-201ENST00000633081 225 ntBASIC3.7□□□□□ -1.82
COL5A3P25940 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL5A3P25940 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.69□□□□□ -1.82
COL5A3P25940 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.69□□□□□ -1.82
COL5A3P25940 AL049780.3-201ENST00000624612 1583 ntBASIC3.69□□□□□ -1.82
COL5A3P25940 MAPK10-362ENST00000641864 4484 ntBASIC3.69□□□□□ -1.82
COL5A3P25940 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
COL5A3P25940 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.69□□□□□ -1.82
COL5A3P25940 AP006437.1-201ENST00000641440 3685 ntBASIC3.69□□□□□ -1.82
COL5A3P25940 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL5A3P25940 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL5A3P25940 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.69□□□□□ -1.82
COL5A3P25940 AL035407.1-201ENST00000429211 571 ntBASIC3.69□□□□□ -1.82
COL5A3P25940 RPL21P112-201ENST00000434403 463 ntBASIC3.69□□□□□ -1.82
COL5A3P25940 OR5H3P-201ENST00000502817 919 ntBASIC3.69□□□□□ -1.82
COL5A3P25940 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.69□□□□□ -1.82
COL5A3P25940 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.69□□□□□ -1.82
COL5A3P25940 AC091544.4-201ENST00000555268 342 ntBASIC3.69□□□□□ -1.82
COL5A3P25940 AC096947.1-201ENST00000603233 470 ntBASIC3.69□□□□□ -1.82
COL5A3P25940 AC007318.2-201ENST00000620999 243 ntBASIC3.69□□□□□ -1.82
COL5A3P25940 AC010149.2-201ENST00000637608 315 ntBASIC3.69□□□□□ -1.82
COL5A3P25940 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.68□□□□□ -1.82
COL5A3P25940 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.68□□□□□ -1.82
COL5A3P25940 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL5A3P25940 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL5A3P25940 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.68□□□□□ -1.82
COL5A3P25940 AC063976.3-201ENST00000426849 329 ntBASIC3.68□□□□□ -1.82
COL5A3P25940 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.68□□□□□ -1.82
COL5A3P25940 HMGN1P18-201ENST00000457642 277 ntBASIC3.68□□□□□ -1.82
COL5A3P25940 AC108078.3-201ENST00000502633 489 ntBASIC3.68□□□□□ -1.82
COL5A3P25940 COX6B1P6-201ENST00000522347 255 ntBASIC3.68□□□□□ -1.82
COL5A3P25940 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.68□□□□□ -1.82
COL5A3P25940 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC3.68□□□□□ -1.82
COL5A3P25940 AC074140.1-201ENST00000621617 208 ntBASIC3.68□□□□□ -1.82
COL5A3P25940 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.68□□□□□ -1.82
COL5A3P25940 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL5A3P25940 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC3.67□□□□□ -1.82
COL5A3P25940 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL5A3P25940 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.67□□□□□ -1.82
COL5A3P25940 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.67□□□□□ -1.82
COL5A3P25940 Y_RNA.638-201ENST00000459374 113 ntBASIC3.67□□□□□ -1.82
COL5A3P25940 AC114781.4-201ENST00000513707 639 ntBASIC3.67□□□□□ -1.82
COL5A3P25940 AC011602.1-201ENST00000546484 331 ntBASIC3.67□□□□□ -1.82
COL5A3P25940 AP004607.9-201ENST00000618202 316 ntBASIC3.67□□□□□ -1.82
COL5A3P25940 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
COL5A3P25940 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL5A3P25940 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL5A3P25940 MTND5P24-201ENST00000438892 1767 ntBASIC3.67□□□□□ -1.82
COL5A3P25940 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL5A3P25940 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL5A3P25940 SNORA68.2-201ENST00000391263 128 ntBASIC3.67□□□□□ -1.82
COL5A3P25940 FAR1P1-201ENST00000427163 934 ntBASIC3.67□□□□□ -1.82
COL5A3P25940 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.67□□□□□ -1.82
COL5A3P25940 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.67□□□□□ -1.82
COL5A3P25940 AC117522.3-201ENST00000507974 584 ntBASIC3.67□□□□□ -1.82
COL5A3P25940 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.67□□□□□ -1.82
COL5A3P25940 IGLVIV-53-201ENST00000520107 367 ntBASIC3.67□□□□□ -1.82
COL5A3P25940 AC009097.3-201ENST00000563557 1018 ntBASIC3.67□□□□□ -1.82
COL5A3P25940 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.67□□□□□ -1.82
COL5A3P25940 AC138761.3-201ENST00000579993 334 ntBASIC3.67□□□□□ -1.82
COL5A3P25940 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC3.67□□□□□ -1.82
COL5A3P25940 BNIP3P10-201ENST00000605360 577 ntBASIC3.67□□□□□ -1.82
COL5A3P25940 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
COL5A3P25940 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.66□□□□□ -1.82
COL5A3P25940 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL5A3P25940 RPL7P26-201ENST00000333817 754 ntBASIC3.66□□□□□ -1.82
COL5A3P25940 AL672167.1-206ENST00000356293 943 ntBASIC3.66□□□□□ -1.82
COL5A3P25940 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms