Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 SNORA70.2-201ENST00000364506 135 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 RNU6-317P-201ENST00000384031 107 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 RNU6-1215P-201ENST00000384441 102 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 MIR298-201ENST00000401212 88 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC007899.1-201ENST00000412776 775 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 CYCSP46-201ENST00000423569 204 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC016712.1-201ENST00000431088 378 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC016831.4-201ENST00000438302 307 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 RPL36AP15-201ENST00000444514 266 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 YWHAQP9-201ENST00000445891 512 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC239367.2-201ENST00000447309 705 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 RPS27AP15-201ENST00000447672 466 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 RPL36AP33-201ENST00000450395 310 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC005229.2-201ENST00000456995 399 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 RPS27P23-201ENST00000487608 251 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 RPL7P38-201ENST00000488396 739 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC006499.5-201ENST00000505037 514 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC010460.1-201ENST00000507087 466 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 HMGB3P16-201ENST00000508037 287 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC018797.3-201ENST00000513388 1241 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC105233.3-201ENST00000531125 744 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC005868.1-201ENST00000536421 331 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC004217.3-201ENST00000551552 878 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC090751.1-201ENST00000566966 267 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 MIR4458-201ENST00000578872 75 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 MIR1254-2-201ENST00000579553 63 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 MIR4801-201ENST00000582704 82 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AL391497.1-201ENST00000608671 547 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 OR6R2P-201ENST00000609216 300 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC012360.2-201ENST00000609349 391 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC124312.6-202ENST00000623624 418 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 USP9YP4-201ENST00000424401 1745 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 AC027514.1-201ENST00000588561 1603 ntBASIC4.82□□□□□ -1.64
DKK3Q9UBP4 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
DKK3Q9UBP4 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 Y_RNA.6-201ENST00000362350 114 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 CYCSP45-201ENST00000402289 315 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 AC068533.2-201ENST00000411872 306 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 MTCYBP5-201ENST00000423752 1135 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 AC011753.3-201ENST00000443436 406 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 ST13P20-201ENST00000447996 1065 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 BTF3P6-201ENST00000448054 499 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 RPL23AP35-201ENST00000451906 501 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 CFTRP1-201ENST00000456646 183 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 RPL23AP71-201ENST00000470966 469 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 RN7SL459P-201ENST00000481078 302 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 AC011825.1-201ENST00000484967 388 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 SNORD116-26-201ENST00000516006 96 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 COX6B1P6-201ENST00000522347 255 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 AP001189.2-201ENST00000527320 189 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 AC135001.1-201ENST00000544546 283 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 AC136624.4-201ENST00000573044 370 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 MIR4284-201ENST00000578924 81 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
DKK3Q9UBP4 MIR4512-201ENST00000583257 77 ntBASIC4.81□□□□□ -1.64
DKK3Q9UBP4 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms