Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC011978.2-201ENST00000569835 2054 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 RPL32P23-201ENST00000397237 405 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AP002784.2-201ENST00000397300 549 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 RNU6-77P-201ENST00000410554 91 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 SNORA57.3-201ENST00000411095 141 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC092832.1-201ENST00000422934 400 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 USP12PY-201ENST00000427677 1064 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 OR51AB1P-201ENST00000429046 620 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 PSMA2P3-201ENST00000429685 675 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 RRM2P4-201ENST00000441721 562 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 SETD6P1-201ENST00000444575 317 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 MOB1AP2-201ENST00000446060 614 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 RPL29P29-201ENST00000448725 423 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC006480.1-201ENST00000449887 378 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 NANOGP10-201ENST00000453325 895 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 HMGN2P7-201ENST00000456186 273 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 RN7SL330P-201ENST00000469709 307 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 RPS4XP6-201ENST00000477670 797 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 RAC1P2-201ENST00000511164 579 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC016065.2-201ENST00000514530 444 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 SUMO2P20-201ENST00000520803 283 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 IGJP1-201ENST00000522682 475 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 PDCL2P2-201ENST00000533651 189 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 OR8L1P-201ENST00000534005 955 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 AL136520.1-202ENST00000555494 763 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 EIF5A2P1-201ENST00000564027 460 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC124283.4-201ENST00000581815 456 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 MIR5187-201ENST00000583479 76 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC017100.2-201ENST00000584628 355 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 AL020997.2-201ENST00000602607 184 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 RNA5SP108-201ENST00000605921 117 ntBASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS35Q96QK1 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
VPS35Q96QK1 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS35Q96QK1 PRO1804-201ENST00000623780 2050 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS35Q96QK1 AC073055.1-201ENST00000456901 1621 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS35Q96QK1 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS35Q96QK1 RNU6-1151P-201ENST00000384684 107 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 BTBD10P2-201ENST00000404779 676 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 TCEA1P2-201ENST00000420496 906 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 UBE2V1P1-201ENST00000430836 445 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 KCTD10P1-201ENST00000434203 625 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 Z77249.1-201ENST00000444622 1175 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 AC005002.1-201ENST00000447458 540 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS35Q96QK1 AL133162.1-201ENST00000463228 453 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 AC008379.1-201ENST00000463655 464 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS35Q96QK1 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS35Q96QK1 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS35Q96QK1 AC093853.1-201ENST00000515689 483 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 AC022695.1-201ENST00000522089 237 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 AC011611.5-201ENST00000552477 578 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 SNORA62.6-201ENST00000606322 83 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 AC021851.1-201ENST00000608537 1082 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 C2orf27A-204ENST00000623058 969 ntBASIC3.75□□□□□ -1.81
VPS35Q96QK1 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS35Q96QK1 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.75□□□□□ -1.81
VPS35Q96QK1 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS35Q96QK1 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms