Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC092651.1-201ENST00000426110 312 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC016027.5-201ENST00000427227 210 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AL354707.3-201ENST00000427308 331 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AL360081.1-201ENST00000428299 555 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 GAPDHP59-201ENST00000435908 267 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 PRPS1P1-201ENST00000445305 876 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RPL29P29-201ENST00000448725 423 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AL162389.1-201ENST00000449233 177 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 MTND4P17-201ENST00000470444 350 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC012158.1-204ENST00000483430 465 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 VN1R105P-201ENST00000486595 910 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC007686.1-201ENST00000488511 463 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RPL7P23-201ENST00000493874 747 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RN7SL362P-201ENST00000494228 267 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC113367.2-201ENST00000505749 160 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RBBP4P6-201ENST00000508098 202 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 FAM206BP-201ENST00000510179 541 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RNU6-1095P-201ENST00000516148 108 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RNA5SP434-201ENST00000516647 121 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC109635.4-202ENST00000531666 412 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AL442663.2-201ENST00000554385 511 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 CTHRC1P1-201ENST00000605383 469 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC141002.1-201ENST00000607025 279 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 RN7SL261P-201ENST00000613441 282 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC110801.1-201ENST00000623590 212 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AC138965.3-201ENST00000623875 498 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 AL442639.1-201ENST00000625030 1899 ntBASIC4.76□□□□□ -1.65
CCDC140Q96MF4 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC140Q96MF4 MR1-209ENST00000617803 7584 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC108751.5-201ENST00000492880 1336 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 XIAPP3-201ENST00000312918 795 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 RNU6-522P-201ENST00000364497 107 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 RNU6-1227P-201ENST00000383981 107 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 Y_RNA.474-201ENST00000384341 102 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AL590004.1-201ENST00000405321 300 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 RNA5SP156-201ENST00000410250 110 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 RPL30P2-201ENST00000414021 291 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC016712.1-201ENST00000431088 378 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC004866.2-201ENST00000438285 481 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 FABP5P13-201ENST00000452144 328 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC004801.2-202ENST00000463559 283 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 RPL23AP11-201ENST00000475260 469 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 RPS27AP1-201ENST00000475545 471 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 PPP1R11P1-201ENST00000486095 376 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC004453.1-201ENST00000487895 408 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 AC008945.1-201ENST00000505144 499 ntBASIC4.75□□□□□ -1.65
CCDC140Q96MF4 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC140Q96MF4 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms