Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC244258.1-201ENST00000637553 1071 ntBASIC3.46□□□□□ -1.86
CCDC42Q96M95 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 SNORA46-201ENST00000384762 135 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 CYCSP19-201ENST00000411715 316 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 RAB9AP3-201ENST00000412737 573 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 AC245054.2-201ENST00000415639 319 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 MTND4P11-201ENST00000417020 1058 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC42Q96M95 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 RPL23AP69-201ENST00000431134 458 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 RAB9AP1-201ENST00000449393 573 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 RPL26P28-201ENST00000451325 435 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 AC103987.1-201ENST00000473394 348 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 RPL21P103-201ENST00000479921 488 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 RPL5P23-201ENST00000496040 868 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 RN7SKP82-201ENST00000516786 223 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 MIR4276-201ENST00000584832 70 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 AL136295.6-201ENST00000610486 658 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 PLCE1P1-201ENST00000622094 305 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 AL356490.1-201ENST00000623079 479 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 RPL23AP61-201ENST00000623642 466 ntBASIC3.45□□□□□ -1.86
CCDC42Q96M95 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC42Q96M95 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC42Q96M95 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC42Q96M95 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC42Q96M95 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC42Q96M95 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC42Q96M95 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
CCDC42Q96M95 RNA5SP124-201ENST00000362739 110 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 DYNLT3P1-201ENST00000378574 347 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 AC122718.1-201ENST00000439448 744 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 HMGN2P21-201ENST00000447764 270 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 UQCRHP3-201ENST00000451503 251 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 RPL21P13-201ENST00000488305 481 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.44□□□□□ -1.86
CCDC42Q96M95 MTATP6P22-201ENST00000507369 598 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 AC113398.2-201ENST00000507630 558 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 HIGD1AP5-201ENST00000529959 259 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 OR5B10P-201ENST00000532869 642 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC42Q96M95 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC42Q96M95 HIGD1AP1-201ENST00000550979 275 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.44□□□□□ -1.86
CCDC42Q96M95 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC42Q96M95 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC42Q96M95 AC105429.2-201ENST00000610567 517 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
CCDC42Q96M95 AL034408.1-202ENST00000636088 415 ntBASIC3.44□□□□□ -1.86
CCDC42Q96M95 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.44□□□□□ -1.86
CCDC42Q96M95 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC42Q96M95 AF117829.1-206ENST00000621883 3802 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CCDC42Q96M95 HSPE1P26-201ENST00000405341 275 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 HMGN1P24-201ENST00000412282 298 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 BX323014.1-201ENST00000412876 237 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 OR2B8P-201ENST00000432841 938 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 RPL7P15-201ENST00000461190 712 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 RN7SL75P-201ENST00000461926 281 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 RPL7P5-201ENST00000471472 736 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 AC093663.1-201ENST00000497190 394 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 POU5F1P7-201ENST00000508759 541 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 HMGN1P15-201ENST00000513870 295 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 PAICSP4-201ENST00000517543 1253 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 RPL12P22-201ENST00000519073 490 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 MIR5186-201ENST00000577504 120 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 SS18L2P2-201ENST00000583960 235 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 RNA5SP108-201ENST00000605921 117 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 AL392088.2-201ENST00000637607 285 ntBASIC3.43□□□□□ -1.86
CCDC42Q96M95 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.43□□□□□ -1.86
CCDC42Q96M95 AC093831.2-201ENST00000624393 3427 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC42Q96M95 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC42Q96M95 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC42Q96M95 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC3.42□□□□□ -1.86
CCDC42Q96M95 RNU6ATAC-201ENST00000408749 126 ntBASIC3.42□□□□□ -1.86
CCDC42Q96M95 AC007389.2-201ENST00000434630 306 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms