Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
PRKDCP78527 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC2.16□□□□□ -2.06
PRKDCP78527 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC2.16□□□□□ -2.06
PRKDCP78527 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
PRKDCP78527 RNA5SP21-201ENST00000410917 96 ntBASIC2.16□□□□□ -2.06
PRKDCP78527 B3GNT2P1-201ENST00000434960 952 ntBASIC2.16□□□□□ -2.06
PRKDCP78527 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC2.16□□□□□ -2.06
PRKDCP78527 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
PRKDCP78527 AC009948.4-201ENST00000604692 675 ntBASIC2.16□□□□□ -2.06
PRKDCP78527 AC010680.4-201ENST00000605334 543 ntBASIC2.16□□□□□ -2.06
PRKDCP78527 AC006840.1-201ENST00000623069 542 ntBASIC2.16□□□□□ -2.06
PRKDCP78527 AC011266.1-201ENST00000624119 3569 ntBASIC2.16□□□□□ -2.06
PRKDCP78527 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
PRKDCP78527 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC2.16□□□□□ -2.06
PRKDCP78527 GVINP1-202ENST00000531871 7271 ntBASIC2.16□□□□□ -2.06
PRKDCP78527 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
PRKDCP78527 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
PRKDCP78527 AL022311.1-201ENST00000623726 19416 ntBASIC2.15□□□□□ -2.06
PRKDCP78527 SNORD15B-201ENST00000384714 146 ntBASIC2.15□□□□□ -2.06
PRKDCP78527 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
PRKDCP78527 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC2.15□□□□□ -2.06
PRKDCP78527 AP000926.3-201ENST00000497201 299 ntBASIC2.15□□□□□ -2.06
PRKDCP78527 RNA5SP154-201ENST00000516193 111 ntBASIC2.15□□□□□ -2.06
PRKDCP78527 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC2.15□□□□□ -2.06
PRKDCP78527 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.15□□□□□ -2.06
PRKDCP78527 PRELID3BP8-201ENST00000604148 295 ntBASIC2.15□□□□□ -2.06
PRKDCP78527 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC2.15□□□□□ -2.06
PRKDCP78527 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC2.15□□□□□ -2.06
PRKDCP78527 RNA5SP508-201ENST00000411327 119 ntBASIC2.15□□□□□ -2.07
PRKDCP78527 AL137014.1-201ENST00000420490 1226 ntBASIC2.15□□□□□ -2.07
PRKDCP78527 AC012123.2-201ENST00000485809 248 ntBASIC2.15□□□□□ -2.07
PRKDCP78527 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.15□□□□□ -2.07
PRKDCP78527 AC233309.1-201ENST00000619522 751 ntBASIC2.15□□□□□ -2.07
PRKDCP78527 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC2.15□□□□□ -2.07
PRKDCP78527 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
PRKDCP78527 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.15□□□□□ -2.07
PRKDCP78527 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC2.15□□□□□ -2.07
PRKDCP78527 ZNF72P-201ENST00000425869 1908 ntBASIC2.15□□□□□ -2.07
PRKDCP78527 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
PRKDCP78527 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
PRKDCP78527 MIR181A2-201ENST00000384863 110 ntBASIC2.15□□□□□ -2.07
PRKDCP78527 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC2.15□□□□□ -2.07
PRKDCP78527 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC2.15□□□□□ -2.07
PRKDCP78527 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC2.15□□□□□ -2.07
PRKDCP78527 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC2.15□□□□□ -2.07
PRKDCP78527 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC2.15□□□□□ -2.07
PRKDCP78527 OSBPL9P4-201ENST00000371707 1800 ntBASIC2.15□□□□□ -2.07
PRKDCP78527 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
PRKDCP78527 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
PRKDCP78527 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.15□□□□□ -2.07
PRKDCP78527 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.15□□□□□ -2.07
PRKDCP78527 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.15□□□□□ -2.07
PRKDCP78527 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC2.15□□□□□ -2.07
PRKDCP78527 RPS4XP22-201ENST00000480755 780 ntBASIC2.15□□□□□ -2.07
PRKDCP78527 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC2.15□□□□□ -2.07
PRKDCP78527 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.15□□□□□ -2.07
PRKDCP78527 AC005351.1-201ENST00000511152 786 ntBASIC2.15□□□□□ -2.07
PRKDCP78527 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.15□□□□□ -2.07
PRKDCP78527 MIR4498-201ENST00000577599 66 ntBASIC2.15□□□□□ -2.07
PRKDCP78527 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.14□□□□□ -2.07
PRKDCP78527 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
PRKDCP78527 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC2.14□□□□□ -2.07
PRKDCP78527 Y_RNA.164-201ENST00000363709 102 ntBASIC2.14□□□□□ -2.07
PRKDCP78527 AC091179.1-201ENST00000461606 579 ntBASIC2.14□□□□□ -2.07
PRKDCP78527 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC2.14□□□□□ -2.07
PRKDCP78527 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC2.14□□□□□ -2.07
PRKDCP78527 MIR1273D-201ENST00000577266 86 ntBASIC2.14□□□□□ -2.07
PRKDCP78527 AP000942.3-201ENST00000603702 160 ntBASIC2.14□□□□□ -2.07
PRKDCP78527 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC2.14□□□□□ -2.07
PRKDCP78527 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
PRKDCP78527 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
PRKDCP78527 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
PRKDCP78527 KPNA2P2-201ENST00000419546 1489 ntBASIC2.14□□□□□ -2.07
PRKDCP78527 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
PRKDCP78527 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
PRKDCP78527 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
PRKDCP78527 AL592045.1-201ENST00000429867 352 ntBASIC2.14□□□□□ -2.07
PRKDCP78527 AC124916.1-201ENST00000444020 547 ntBASIC2.14□□□□□ -2.07
PRKDCP78527 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC2.14□□□□□ -2.07
PRKDCP78527 AC099506.2-201ENST00000623074 221 ntBASIC2.14□□□□□ -2.07
PRKDCP78527 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC2.14□□□□□ -2.07
PRKDCP78527 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
PRKDCP78527 GABRG2-229ENST00000641017 3628 ntBASIC2.14□□□□□ -2.07
PRKDCP78527 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
PRKDCP78527 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.14□□□□□ -2.07
PRKDCP78527 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
PRKDCP78527 CST9LP2-201ENST00000437612 320 ntBASIC2.14□□□□□ -2.07
PRKDCP78527 AC146507.2-201ENST00000460608 476 ntBASIC2.14□□□□□ -2.07
PRKDCP78527 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC2.14□□□□□ -2.07
PRKDCP78527 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC2.14□□□□□ -2.07
PRKDCP78527 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
PRKDCP78527 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
PRKDCP78527 DMD-205ENST00000359836 7339 ntTSL 5 BASIC2.13□□□□□ -2.07
PRKDCP78527 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
PRKDCP78527 AC008725.1-201ENST00000605123 2263 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
PRKDCP78527 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
PRKDCP78527 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC2.13□□□□□ -2.07
PRKDCP78527 U3.42-201ENST00000408746 214 ntBASIC2.13□□□□□ -2.07
PRKDCP78527 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms