Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 AC107081.3-201ENST00000612715 2034 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA1P49639 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC3.8□□□□□ -1.8
HOXA1P49639 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 DSTNP4-201ENST00000399472 474 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 DPPA2P3-201ENST00000411853 655 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA1P49639 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXA1P49639 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA1P49639 AC092647.1-201ENST00000420654 287 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA1P49639 AC129850.1-201ENST00000436203 508 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXA1P49639 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA1P49639 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXA1P49639 MTND1P29-201ENST00000448112 647 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 RPL23AP35-201ENST00000451906 501 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 ZNF114P1-201ENST00000453500 292 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA1P49639 RAP1BP2-201ENST00000478270 544 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA1P49639 AL024509.2-201ENST00000493462 493 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 Y_RNA.655-201ENST00000515919 96 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 RNU6-678P-201ENST00000516832 109 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 RN7SKP96-201ENST00000516948 297 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 AC027309.2-201ENST00000520566 192 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXA1P49639 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA1P49639 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXA1P49639 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA1P49639 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXA1P49639 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA1P49639 AC103987.3-201ENST00000582071 292 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 MIR4691-201ENST00000583764 85 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC3.8□□□□□ -1.8
HOXA1P49639 AF131215.7-201ENST00000602443 707 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.8□□□□□ -1.8
HOXA1P49639 MEMO1P5-201ENST00000604810 406 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 AC116651.1-201ENST00000609724 556 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 EIF3FP1-201ENST00000613970 806 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 AC022467.1-201ENST00000614738 749 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 AL713922.2-201ENST00000619384 716 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 U7.8-201ENST00000619968 63 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 AL356266.1-201ENST00000623311 483 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 PCMTD1P7-201ENST00000634506 357 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXA1P49639 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXA1P49639 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
HOXA1P49639 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.8□□□□□ -1.8
HOXA1P49639 AC022893.2-201ENST00000564832 3296 ntBASIC3.8□□□□□ -1.8
HOXA1P49639 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC3.8□□□□□ -1.8
HOXA1P49639 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXA1P49639 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
HOXA1P49639 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA1P49639 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA1P49639 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA1P49639 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HOXA1P49639 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXA1P49639 RPS4XP5-202ENST00000449995 1334 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 OR5BR1P-201ENST00000524992 1330 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 AC011477.1-204ENST00000623416 1325 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA1P49639 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXA1P49639 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
HOXA1P49639 OR4A15-201ENST00000314706 1035 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXA1P49639 RNU6-251P-201ENST00000363235 104 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 RNU4-75P-201ENST00000364621 146 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 ARL4AP5-201ENST00000404372 599 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA1P49639 RNU2-28P-201ENST00000410457 189 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 RNA5SP306-201ENST00000411087 107 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 TPMTP3-201ENST00000411928 735 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 RPL7P8-201ENST00000411964 730 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 AC008280.1-201ENST00000418851 412 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 Z74021.1-201ENST00000423610 407 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 AL031736.2-201ENST00000426573 787 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA1P49639 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXA1P49639 RHOT1P3-201ENST00000436571 331 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
HOXA1P49639 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXA1P49639 MTCO2P7-201ENST00000446518 666 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.79□□□□□ -1.8
HOXA1P49639 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXA1P49639 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXA1P49639 KATNBL1P6-201ENST00000453433 915 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 RPL18AP17-201ENST00000455326 198 ntBASIC3.79□□□□□ -1.8
HOXA1P49639 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms