Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.97□□□□□ -1.61
CUX1P39880 OR4C2P-201ENST00000530855 1064 ntBASIC4.97□□□□□ -1.61
CUX1P39880 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.97□□□□□ -1.61
CUX1P39880 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.97□□□□□ -1.61
CUX1P39880 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC4.97□□□□□ -1.61
CUX1P39880 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CUX1P39880 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
CUX1P39880 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
CUX1P39880 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CUX1P39880 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CUX1P39880 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
CUX1P39880 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
CUX1P39880 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
CUX1P39880 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
CUX1P39880 RNU2-52P-201ENST00000410680 190 ntBASIC4.96□□□□□ -1.62
CUX1P39880 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
CUX1P39880 OR6C64P-201ENST00000419708 825 ntBASIC4.96□□□□□ -1.62
CUX1P39880 AC063976.3-201ENST00000426849 329 ntBASIC4.96□□□□□ -1.62
CUX1P39880 RPL21P40-201ENST00000428586 483 ntBASIC4.96□□□□□ -1.62
CUX1P39880 AC087499.2-201ENST00000432861 149 ntBASIC4.96□□□□□ -1.62
CUX1P39880 RPL21P112-201ENST00000434403 463 ntBASIC4.96□□□□□ -1.62
CUX1P39880 ISCA1P2-201ENST00000438679 421 ntBASIC4.96□□□□□ -1.62
CUX1P39880 SNORD109B-201ENST00000458961 67 ntBASIC4.96□□□□□ -1.62
CUX1P39880 SNORD109A-201ENST00000459128 67 ntBASIC4.96□□□□□ -1.62
CUX1P39880 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.96□□□□□ -1.62
CUX1P39880 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC4.96□□□□□ -1.62
CUX1P39880 AC073476.4-201ENST00000628409 72 ntBASIC4.96□□□□□ -1.62
CUX1P39880 TOPORSLP1-201ENST00000467693 2102 ntBASIC4.96□□□□□ -1.62
CUX1P39880 AC007336.1-201ENST00000576365 3828 ntBASIC4.96□□□□□ -1.62
CUX1P39880 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
CUX1P39880 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.95□□□□□ -1.62
CUX1P39880 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
CUX1P39880 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CUX1P39880 OR13C3-201ENST00000374781 1108 ntBASIC4.95□□□□□ -1.62
CUX1P39880 AL360182.1-201ENST00000397433 468 ntBASIC4.95□□□□□ -1.62
CUX1P39880 AC110754.1-201ENST00000399740 601 ntBASIC4.95□□□□□ -1.62
CUX1P39880 ASNSP4-201ENST00000511103 447 ntBASIC4.95□□□□□ -1.62
CUX1P39880 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.95□□□□□ -1.62
CUX1P39880 AC096947.1-201ENST00000603233 470 ntBASIC4.95□□□□□ -1.62
CUX1P39880 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC4.95□□□□□ -1.62
CUX1P39880 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
CUX1P39880 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CUX1P39880 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
CUX1P39880 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CUX1P39880 AC005332.5-201ENST00000591222 2919 ntBASIC4.95□□□□□ -1.62
CUX1P39880 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CUX1P39880 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CUX1P39880 MRPL50P2-201ENST00000416821 482 ntBASIC4.94□□□□□ -1.62
CUX1P39880 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CUX1P39880 TGIF1P1-201ENST00000558095 802 ntBASIC4.94□□□□□ -1.62
CUX1P39880 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.94□□□□□ -1.62
CUX1P39880 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CUX1P39880 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CUX1P39880 RNU6-859P-201ENST00000362728 107 ntBASIC4.93□□□□□ -1.62
CUX1P39880 RNU6-851P-201ENST00000384565 107 ntBASIC4.93□□□□□ -1.62
CUX1P39880 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.93□□□□□ -1.62
CUX1P39880 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.93□□□□□ -1.62
CUX1P39880 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CUX1P39880 AC022509.4-201ENST00000621404 572 ntBASIC4.93□□□□□ -1.62
CUX1P39880 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CUX1P39880 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.93□□□□□ -1.62
CUX1P39880 GABRG2-229ENST00000641017 3628 ntBASIC4.93□□□□□ -1.62
CUX1P39880 AC114967.1-201ENST00000504890 259 ntBASIC4.92□□□□□ -1.62
CUX1P39880 AC114781.4-201ENST00000513707 639 ntBASIC4.92□□□□□ -1.62
CUX1P39880 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.92□□□□□ -1.62
CUX1P39880 AC234778.2-201ENST00000566241 354 ntBASIC4.92□□□□□ -1.62
CUX1P39880 AC106734.1-201ENST00000568646 663 ntBASIC4.92□□□□□ -1.62
CUX1P39880 AC141257.3-201ENST00000572906 215 ntBASIC4.92□□□□□ -1.62
CUX1P39880 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.92□□□□□ -1.62
CUX1P39880 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
CUX1P39880 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CUX1P39880 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CUX1P39880 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
CUX1P39880 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.92□□□□□ -1.62
CUX1P39880 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CUX1P39880 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.92□□□□□ -1.62
CUX1P39880 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
CUX1P39880 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.92□□□□□ -1.62
CUX1P39880 AL445529.1-201ENST00000398713 389 ntBASIC4.92□□□□□ -1.62
CUX1P39880 AL356057.1-202ENST00000402263 756 ntBASIC4.92□□□□□ -1.62
CUX1P39880 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC4.92□□□□□ -1.62
CUX1P39880 BX679664.1-201ENST00000434429 253 ntBASIC4.92□□□□□ -1.62
CUX1P39880 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.92□□□□□ -1.62
CUX1P39880 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.92□□□□□ -1.62
CUX1P39880 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.92□□□□□ -1.62
CUX1P39880 RNU4ATAC3P-201ENST00000516699 126 ntBASIC4.92□□□□□ -1.62
CUX1P39880 AP001636.2-201ENST00000525517 696 ntBASIC4.92□□□□□ -1.62
CUX1P39880 AL390334.1-201ENST00000556395 450 ntBASIC4.92□□□□□ -1.62
CUX1P39880 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CUX1P39880 AL592494.2-201ENST00000425455 1548 ntBASIC4.91□□□□□ -1.62
CUX1P39880 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CUX1P39880 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
CUX1P39880 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CUX1P39880 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
CUX1P39880 GCNT6-201ENST00000379591 934 ntBASIC4.91□□□□□ -1.62
CUX1P39880 AC009263.1-201ENST00000441193 1239 ntBASIC4.91□□□□□ -1.62
CUX1P39880 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC4.91□□□□□ -1.62
CUX1P39880 AC011602.1-201ENST00000546484 331 ntBASIC4.91□□□□□ -1.62
CUX1P39880 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
CUX1P39880 AC006840.1-201ENST00000623069 542 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 123.3 ms