Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.75□□□□□ -1.81
COL5A3P25940 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.75□□□□□ -1.81
COL5A3P25940 AC104763.2-201ENST00000604179 382 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 AC022509.4-201ENST00000621404 572 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
COL5A3P25940 AC091903.1-201ENST00000624322 454 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
COL5A3P25940 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL5A3P25940 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.75□□□□□ -1.81
COL5A3P25940 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL5A3P25940 AL356057.1-202ENST00000402263 756 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 AL121890.1-201ENST00000435457 205 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 RPL32P28-201ENST00000443577 397 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 NPM1P13-201ENST00000452663 865 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.75□□□□□ -1.81
COL5A3P25940 AP001636.2-201ENST00000525517 696 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
COL5A3P25940 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.75□□□□□ -1.81
COL5A3P25940 AC073476.4-201ENST00000628409 72 ntBASIC3.75□□□□□ -1.81
COL5A3P25940 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL5A3P25940 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.74□□□□□ -1.81
COL5A3P25940 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL5A3P25940 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL5A3P25940 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL5A3P25940 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL5A3P25940 ZNF826P-207ENST00000622273 1910 ntBASIC3.74□□□□□ -1.81
COL5A3P25940 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL5A3P25940 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
COL5A3P25940 MIR9-1-201ENST00000385198 89 ntBASIC3.74□□□□□ -1.81
COL5A3P25940 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
COL5A3P25940 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.74□□□□□ -1.81
COL5A3P25940 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC3.74□□□□□ -1.81
COL5A3P25940 AC002553.2-201ENST00000453217 340 ntBASIC3.74□□□□□ -1.81
COL5A3P25940 SNORD109B-201ENST00000458961 67 ntBASIC3.74□□□□□ -1.81
COL5A3P25940 SNORD109A-201ENST00000459128 67 ntBASIC3.74□□□□□ -1.81
COL5A3P25940 AC093755.1-201ENST00000512950 1023 ntBASIC3.74□□□□□ -1.81
COL5A3P25940 snoU109.6-201ENST00000516831 118 ntBASIC3.74□□□□□ -1.81
COL5A3P25940 EIF5A2P1-201ENST00000564027 460 ntBASIC3.74□□□□□ -1.81
COL5A3P25940 AC234778.2-201ENST00000566241 354 ntBASIC3.74□□□□□ -1.81
COL5A3P25940 MIR5047-201ENST00000579212 100 ntBASIC3.74□□□□□ -1.81
COL5A3P25940 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.74□□□□□ -1.81
COL5A3P25940 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL5A3P25940 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL5A3P25940 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL5A3P25940 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
COL5A3P25940 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL5A3P25940 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
COL5A3P25940 RNU6-851P-201ENST00000384565 107 ntBASIC3.73□□□□□ -1.81
COL5A3P25940 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.73□□□□□ -1.81
COL5A3P25940 AC009263.1-201ENST00000441193 1239 ntBASIC3.73□□□□□ -1.81
COL5A3P25940 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC3.73□□□□□ -1.81
COL5A3P25940 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.73□□□□□ -1.81
COL5A3P25940 AC114967.1-201ENST00000504890 259 ntBASIC3.73□□□□□ -1.81
COL5A3P25940 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.73□□□□□ -1.81
COL5A3P25940 RN7SKP272-201ENST00000516988 232 ntBASIC3.73□□□□□ -1.81
COL5A3P25940 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.73□□□□□ -1.81
COL5A3P25940 OR4C2P-201ENST00000530855 1064 ntBASIC3.73□□□□□ -1.81
COL5A3P25940 TGIF1P1-201ENST00000558095 802 ntBASIC3.73□□□□□ -1.81
COL5A3P25940 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL5A3P25940 BDH2P1-201ENST00000602288 736 ntBASIC3.73□□□□□ -1.81
COL5A3P25940 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
COL5A3P25940 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL5A3P25940 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL5A3P25940 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.73□□□□□ -1.81
COL5A3P25940 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
COL5A3P25940 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.73□□□□□ -1.81
COL5A3P25940 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL5A3P25940 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC3.73□□□□□ -1.81
COL5A3P25940 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
COL5A3P25940 OR13C3-201ENST00000374781 1108 ntBASIC3.73□□□□□ -1.81
COL5A3P25940 RPL6P21-201ENST00000418672 846 ntBASIC3.73□□□□□ -1.81
COL5A3P25940 NPM1P24-201ENST00000428039 894 ntBASIC3.73□□□□□ -1.81
COL5A3P25940 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
COL5A3P25940 AL049874.4-201ENST00000557593 255 ntBASIC3.73□□□□□ -1.81
COL5A3P25940 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
COL5A3P25940 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
COL5A3P25940 AL592494.2-201ENST00000425455 1548 ntBASIC3.72□□□□□ -1.81
COL5A3P25940 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.72□□□□□ -1.81
COL5A3P25940 SNORA67.4-201ENST00000384688 142 ntBASIC3.72□□□□□ -1.81
COL5A3P25940 RNU2-52P-201ENST00000410680 190 ntBASIC3.72□□□□□ -1.81
COL5A3P25940 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.72□□□□□ -1.81
COL5A3P25940 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC3.72□□□□□ -1.81
COL5A3P25940 RPS17P11-201ENST00000474297 293 ntBASIC3.72□□□□□ -1.81
COL5A3P25940 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.72□□□□□ -1.81
COL5A3P25940 AC124856.1-201ENST00000600819 896 ntBASIC3.72□□□□□ -1.81
COL5A3P25940 AC007566.2-201ENST00000603642 413 ntBASIC3.72□□□□□ -1.81
COL5A3P25940 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
COL5A3P25940 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC3.72□□□□□ -1.81
COL5A3P25940 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL5A3P25940 AC138393.1-206ENST00000540997 1886 ntBASIC3.71□□□□□ -1.81
COL5A3P25940 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL5A3P25940 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.71□□□□□ -1.82
COL5A3P25940 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.71□□□□□ -1.82
COL5A3P25940 RPL21P40-201ENST00000428586 483 ntBASIC3.71□□□□□ -1.82
COL5A3P25940 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.71□□□□□ -1.82
COL5A3P25940 MIR4425-201ENST00000580572 84 ntBASIC3.71□□□□□ -1.82
COL5A3P25940 AC008507.1-201ENST00000587506 734 ntBASIC3.71□□□□□ -1.82
COL5A3P25940 AC136601.2-201ENST00000604356 474 ntBASIC3.71□□□□□ -1.82
COL5A3P25940 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms