Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXC4P09017 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXC4P09017 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.52□□□□□ -1.85
HOXC4P09017 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXC4P09017 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.52□□□□□ -1.85
HOXC4P09017 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXC4P09017 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC4P09017 AL136520.1-201ENST00000600311 1322 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXC4P09017 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXC4P09017 AL590290.1-201ENST00000405336 380 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC4P09017 RANP4-201ENST00000413361 655 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXC4P09017 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.51□□□□□ -1.85
HOXC4P09017 AL354692.1-201ENST00000423044 315 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 AL031736.2-201ENST00000426573 787 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC4P09017 IFNNP1-201ENST00000429219 553 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 ATP5JP1-201ENST00000431631 322 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC4P09017 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC4P09017 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC4P09017 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.51□□□□□ -1.85
HOXC4P09017 HMGB1P5-202ENST00000451497 985 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC4P09017 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC4P09017 RNU6-889P-201ENST00000517189 103 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC4P09017 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC4P09017 AL133457.1-201ENST00000564251 987 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXC4P09017 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC4P09017 MIR5047-201ENST00000579212 100 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 AC115085.1-201ENST00000588924 229 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 RPAP2P1-201ENST00000603626 1168 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXC4P09017 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXC4P09017 AC084824.5-201ENST00000612009 413 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 AP004607.9-201ENST00000618202 316 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 AC012314.7-201ENST00000619693 93 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 C2orf27A-204ENST00000623058 969 ntBASIC3.51□□□□□ -1.85
HOXC4P09017 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXC4P09017 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HOXC4P09017 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXC4P09017 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXC4P09017 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXC4P09017 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXC4P09017 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXC4P09017 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
HOXC4P09017 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXC4P09017 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXC4P09017 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
HOXC4P09017 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HOXC4P09017 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC4P09017 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC4P09017 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC4P09017 AC025125.1-201ENST00000624743 1922 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC4P09017 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC4P09017 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC4P09017 PRO1804-201ENST00000623780 2050 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC4P09017 RNA5SP50-201ENST00000363731 107 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 SNORD46.1-201ENST00000364139 104 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC4P09017 CCNB2P1-201ENST00000399411 1150 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 PTGES3P2-201ENST00000407942 482 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 RNU4-74P-201ENST00000411280 161 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXC4P09017 RPL30P2-201ENST00000414021 291 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXC4P09017 AC006989.1-201ENST00000427212 131 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXC4P09017 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXC4P09017 CYCSP35-201ENST00000451978 304 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXC4P09017 MTCO3P20-201ENST00000454926 688 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 HMGN2P7-201ENST00000456186 273 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 MTND2P30-201ENST00000456663 382 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 U3.44-201ENST00000458938 192 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 AC010307.1-201ENST00000467206 836 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 RN7SL330P-201ENST00000469709 307 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 RN7SL594P-201ENST00000470590 287 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXC4P09017 TRAV31-201ENST00000502780 342 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.5□□□□□ -1.85
HOXC4P09017 WBP1LP4-201ENST00000505043 344 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXC4P09017 AC005798.1-201ENST00000513715 387 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 RN7SKP82-201ENST00000516786 223 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 AC008489.1-201ENST00000524271 483 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 AP002812.4-201ENST00000532139 286 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 PDCL2P2-201ENST00000533651 189 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.5□□□□□ -1.85
HOXC4P09017 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXC4P09017 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.5□□□□□ -1.85
HOXC4P09017 MTND4LP24-201ENST00000572277 291 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 AC126365.2-201ENST00000580630 379 ntBASIC3.5□□□□□ -1.85
HOXC4P09017 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms