Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MIR4444-2-201ENST00000584390 74 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC017100.2-201ENST00000584628 355 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AL451044.1-201ENST00000604867 238 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AP005137.2-201ENST00000609238 400 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 MIR6864-201ENST00000617935 70 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 OR5BE1P-202ENST00000641168 1176 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC012020.1-201ENST00000624541 1728 ntBASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC3Q9BQI4 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 ZNF29P-201ENST00000225587 168 ntBASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 RNU6-1279P-201ENST00000383917 103 ntBASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 SFR1P1-201ENST00000403720 688 ntBASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AL513175.2-201ENST00000422071 443 ntBASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AC092648.1-201ENST00000425870 423 ntBASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 VN1R25P-201ENST00000443385 738 ntBASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 RPL36AP13-201ENST00000457490 317 ntBASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 BNIP3P41-201ENST00000503774 571 ntBASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AC113347.3-201ENST00000509113 148 ntBASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AC005255.1-201ENST00000593748 216 ntBASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AL020997.3-201ENST00000602843 359 ntBASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 AC013244.3-201ENST00000605614 388 ntBASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.97□□□□□ -1.77
CCDC3Q9BQI4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC3Q9BQI4 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 SNORA60-201ENST00000362396 134 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AL133412.1-201ENST00000380194 2992 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 RPS3AP37-201ENST00000419176 745 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 RPL30P3-201ENST00000424262 333 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AC018644.1-201ENST00000429934 551 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AC084290.1-201ENST00000434995 374 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AL358232.1-201ENST00000448030 501 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 PPBPP1-201ENST00000510807 373 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 KRT19P6-201ENST00000510983 209 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 SOD1P3-201ENST00000518682 454 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 MTND6P33-201ENST00000571794 183 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AC107982.3-201ENST00000584957 985 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AL592436.1-201ENST00000605135 558 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AC009237.17-201ENST00000618111 748 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 CR392039.5-201ENST00000623201 510 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AC124312.6-202ENST00000623624 418 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AC008993.2-201ENST00000631744 806 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms