Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 OR7A8P-201ENST00000595427 913 ntBASIC2.91□□□□□ -1.94
VPS13AQ96RL7 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
VPS13AQ96RL7 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
VPS13AQ96RL7 RNVU1-3-201ENST00000364313 161 ntBASIC2.9□□□□□ -1.94
VPS13AQ96RL7 ATF1P1-201ENST00000406040 927 ntBASIC2.9□□□□□ -1.94
VPS13AQ96RL7 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC2.9□□□□□ -1.94
VPS13AQ96RL7 CST9LP2-201ENST00000437612 320 ntBASIC2.9□□□□□ -1.94
VPS13AQ96RL7 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC2.9□□□□□ -1.94
VPS13AQ96RL7 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC2.9□□□□□ -1.94
VPS13AQ96RL7 AC099506.2-201ENST00000623074 221 ntBASIC2.9□□□□□ -1.94
VPS13AQ96RL7 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
VPS13AQ96RL7 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
VPS13AQ96RL7 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.94
VPS13AQ96RL7 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
VPS13AQ96RL7 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 RNA5SP21-201ENST00000410917 96 ntBASIC2.9□□□□□ -1.95
VPS13AQ96RL7 UBE2V2P4-201ENST00000447495 259 ntBASIC2.9□□□□□ -1.95
VPS13AQ96RL7 ANP32BP2-201ENST00000454525 545 ntBASIC2.9□□□□□ -1.95
VPS13AQ96RL7 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 AC106785.3-201ENST00000564064 847 ntBASIC2.9□□□□□ -1.95
VPS13AQ96RL7 AC015871.2-201ENST00000603605 948 ntBASIC2.9□□□□□ -1.95
VPS13AQ96RL7 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 YWHAEP5-201ENST00000431545 765 ntBASIC2.9□□□□□ -1.95
VPS13AQ96RL7 AC092447.2-201ENST00000435487 669 ntBASIC2.9□□□□□ -1.95
VPS13AQ96RL7 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 RPL9P32-201ENST00000464118 620 ntBASIC2.9□□□□□ -1.95
VPS13AQ96RL7 METTL15P1-201ENST00000481421 1045 ntBASIC2.9□□□□□ -1.95
VPS13AQ96RL7 RPL31P13-201ENST00000484151 370 ntBASIC2.9□□□□□ -1.95
VPS13AQ96RL7 RNA5SP154-201ENST00000516193 111 ntBASIC2.9□□□□□ -1.95
VPS13AQ96RL7 RGS4-207ENST00000527809 817 ntTSL 4 BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS13AQ96RL7 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 MIR93-201ENST00000385024 80 ntBASIC2.89□□□□□ -1.95
VPS13AQ96RL7 AC105402.1-201ENST00000413336 545 ntBASIC2.89□□□□□ -1.95
VPS13AQ96RL7 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 Y_RNA.118-201ENST00000363300 101 ntBASIC2.89□□□□□ -1.95
VPS13AQ96RL7 MTCO1P51-201ENST00000427672 1060 ntBASIC2.89□□□□□ -1.95
VPS13AQ96RL7 NIPA2P5-201ENST00000452282 464 ntBASIC2.89□□□□□ -1.95
VPS13AQ96RL7 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 SULT1C2P2-201ENST00000562517 294 ntBASIC2.89□□□□□ -1.95
VPS13AQ96RL7 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC2.89□□□□□ -1.95
VPS13AQ96RL7 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 SNORA9.2-201ENST00000365361 133 ntBASIC2.88□□□□□ -1.95
VPS13AQ96RL7 Y_RNA.508-201ENST00000384502 114 ntBASIC2.88□□□□□ -1.95
VPS13AQ96RL7 RNA5SP508-201ENST00000411327 119 ntBASIC2.88□□□□□ -1.95
VPS13AQ96RL7 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 AC009163.5-201ENST00000575421 637 ntBASIC2.88□□□□□ -1.95
VPS13AQ96RL7 DPRXP4-201ENST00000578053 568 ntBASIC2.88□□□□□ -1.95
VPS13AQ96RL7 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 MTND5P24-201ENST00000438892 1767 ntBASIC2.88□□□□□ -1.95
VPS13AQ96RL7 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 Y_RNA.4-201ENST00000362333 112 ntBASIC2.88□□□□□ -1.95
VPS13AQ96RL7 SNORD74.4-201ENST00000364129 80 ntBASIC2.88□□□□□ -1.95
VPS13AQ96RL7 GAPDHP39-201ENST00000481866 979 ntBASIC2.88□□□□□ -1.95
VPS13AQ96RL7 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 KPNA2P2-201ENST00000419546 1489 ntBASIC2.88□□□□□ -1.95
VPS13AQ96RL7 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 AC117522.3-201ENST00000507974 584 ntBASIC2.88□□□□□ -1.95
VPS13AQ96RL7 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS13AQ96RL7 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms