Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS39Q96JC1 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC110792.1-201ENST00000491826 472 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS39Q96JC1 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC104057.1-201ENST00000515547 497 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 RN7SKP122-201ENST00000515923 296 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 SNORA31.9-201ENST00000516429 84 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 RN7SKP116-201ENST00000516902 319 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 RNU6-1073P-201ENST00000517182 106 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 NARSP2-201ENST00000518524 679 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 AP004371.1-201ENST00000525240 214 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC079148.1-201ENST00000565944 819 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC069366.1-201ENST00000583159 838 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC021851.1-201ENST00000608537 1082 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 MIR6758-201ENST00000620653 63 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 AC090506.2-201ENST00000624521 419 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 OR52H1-202ENST00000641796 1061 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS39Q96JC1 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS39Q96JC1 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS39Q96JC1 MTCO1P6-201ENST00000481192 1384 ntBASIC3.88□□□□□ -1.79
VPS39Q96JC1 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
VPS39Q96JC1 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS39Q96JC1 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS39Q96JC1 RNU1-18P-201ENST00000363062 164 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 MT-TC-201ENST00000387405 66 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 RNU6-837P-201ENST00000391056 108 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS39Q96JC1 PTMAP5-201ENST00000393073 333 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 RPS26P8-201ENST00000393490 348 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 UBE2V1P9-201ENST00000414760 368 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
VPS39Q96JC1 TOMM22P1-201ENST00000418578 312 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 OFD1P18Y-201ENST00000420889 959 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 COX6CP17-201ENST00000421389 185 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS39Q96JC1 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 SNORA71B-202ENST00000439232 272 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 AC092170.1-201ENST00000440211 356 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 MTCO3P20-201ENST00000454926 688 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 HMGN2P16-201ENST00000456802 261 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 RPS15AP1-201ENST00000457423 391 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 RN7SL93P-201ENST00000463035 293 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 RPS3AP6-201ENST00000484430 795 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 AC005726.1-201ENST00000494679 427 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 SNORA76.2-201ENST00000517095 137 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 IGKV2-23-201ENST00000518729 323 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 HIGD1AP6-201ENST00000521833 279 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 AP001207.1-201ENST00000524051 481 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS39Q96JC1 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 AP003049.1-201ENST00000529418 457 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 AC092470.1-201ENST00000546187 132 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 SYF2P1-201ENST00000550658 413 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 AL133457.1-201ENST00000564251 987 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 BNIP3P4-201ENST00000604946 565 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.87□□□□□ -1.79
VPS39Q96JC1 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS39Q96JC1 AL355578.1-201ENST00000607405 1328 ntBASIC3.87□□□□□ -1.79
VPS39Q96JC1 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
VPS39Q96JC1 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
VPS39Q96JC1 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS39Q96JC1 ZNF734P-201ENST00000419494 1534 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS39Q96JC1 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS39Q96JC1 RNU6-374P-201ENST00000364146 108 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 RNA5SP97-201ENST00000365006 84 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 RNU6-444P-201ENST00000383988 108 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 RNU6-1181P-201ENST00000384191 106 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 RNU6-1226P-201ENST00000384317 107 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 SNORA70C-201ENST00000384538 135 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 ATP5F1P4-201ENST00000397288 746 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS39Q96JC1 AL049693.1-201ENST00000402760 611 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 RNU4-6P-201ENST00000410804 122 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 RNU4-27P-201ENST00000410889 139 ntBASIC3.86□□□□□ -1.79
VPS39Q96JC1 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS39Q96JC1 PAICSP7-201ENST00000419829 962 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms