Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 UBE2CP3-201ENST00000502715 450 ntBASIC3.7□□□□□ -1.82
CCDC112Q8NEF3 POU5F1P7-201ENST00000508759 541 ntBASIC3.7□□□□□ -1.82
CCDC112Q8NEF3 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.7□□□□□ -1.82
CCDC112Q8NEF3 RN7SKP18-201ENST00000516005 275 ntBASIC3.7□□□□□ -1.82
CCDC112Q8NEF3 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC112Q8NEF3 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC112Q8NEF3 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC112Q8NEF3 U3.45-201ENST00000607547 219 ntBASIC3.7□□□□□ -1.82
CCDC112Q8NEF3 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC112Q8NEF3 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
CCDC112Q8NEF3 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC112Q8NEF3 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC112Q8NEF3 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 RPS29P4-201ENST00000414733 161 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 RPL32P35-201ENST00000415214 394 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 OR2AS1P-201ENST00000427827 319 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 OR4F13P-201ENST00000428478 931 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 ETF1P3-201ENST00000430422 1160 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AC244505.4-201ENST00000434905 287 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 RPL23AP83-201ENST00000434984 473 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 SSXP5-201ENST00000443473 287 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AC022336.1-201ENST00000475510 337 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AC023050.1-201ENST00000498198 304 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AC067852.3-201ENST00000589177 561 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AC006557.5-201ENST00000603126 811 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AC092354.2-201ENST00000607786 514 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AC069200.1-201ENST00000609511 323 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 uc_338.9-201ENST00000617424 182 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 SNORD39.4-201ENST00000620099 78 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 DCAF13P1-201ENST00000495256 1330 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 AC093831.2-201ENST00000624393 3427 ntBASIC3.69□□□□□ -1.82
CCDC112Q8NEF3 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 RNA5SP72-201ENST00000364442 117 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 DYNLT3P1-201ENST00000378574 347 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 KRR1P1-201ENST00000419430 803 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 RPL23AP69-201ENST00000431134 458 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 RN7SL75P-201ENST00000461926 281 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC021205.1-201ENST00000468797 348 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC093663.1-201ENST00000497190 394 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC112198.1-201ENST00000505369 1220 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC012213.4-201ENST00000606457 354 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 SNORA35B-201ENST00000607417 129 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 XIST_intron.1-201ENST00000619444 68 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 U4.6-201ENST00000621618 127 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 SYT14P1-202ENST00000600441 1448 ntBASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC112Q8NEF3 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 RNA5SP387-201ENST00000364226 106 ntBASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 Y_RNA.333-201ENST00000365274 102 ntBASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 AC240504.1-201ENST00000395709 845 ntBASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 AL035423.1-201ENST00000420331 213 ntBASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 AC091286.1-201ENST00000431233 461 ntBASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 RN7SL339P-201ENST00000580597 296 ntBASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 SRGNP1-201ENST00000603392 451 ntBASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 SNORA50A-202ENST00000629536 136 ntBASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC112Q8NEF3 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 153.7 ms