Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 HSPE1P14-201ENST00000605812 302 ntBASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 AL627309.6-201ENST00000606857 840 ntBASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 AC004908.2-201ENST00000609090 574 ntBASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 OR6R2P-201ENST00000609216 300 ntBASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 AP005431.1-201ENST00000618479 319 ntBASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 AC079597.1-201ENST00000624306 508 ntBASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 MIR1910-201ENST00000636955 80 ntBASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 AC232271.1-201ENST00000602455 2715 ntBASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 AC123769.1-201ENST00000530992 3192 ntBASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 ASNSP3-201ENST00000451989 1306 ntBASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.47□□□□□ -1.53
UBE3DQ7Z6J8 SMG1P7-201ENST00000565246 2704 ntBASIC5.46□□□□□ -1.53
UBE3DQ7Z6J8 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
UBE3DQ7Z6J8 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC004972.1-201ENST00000623934 2209 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 MIR130A-201ENST00000385274 89 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 METTL15P3-201ENST00000415522 1221 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 OR1AA1P-201ENST00000419597 916 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 GPM6BP2-201ENST00000432046 144 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 YWHAZP8-201ENST00000436935 731 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 GPM6BP1-201ENST00000446387 144 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 RNU6-1218P-201ENST00000458990 108 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 Y_RNA.635-201ENST00000459041 101 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 ACA64.1-201ENST00000459171 127 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC011476.1-201ENST00000466725 307 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 RPL32P33-201ENST00000487023 394 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC021678.3-201ENST00000517893 476 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 MRPS16P1-201ENST00000523462 412 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC026464.5-201ENST00000562497 722 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC006270.2-201ENST00000578523 652 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 MTCYBP13-201ENST00000578634 1093 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AP001330.4-201ENST00000604350 154 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC009597.2-201ENST00000604659 592 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC040168.1-201ENST00000623594 991 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 AC092079.1-201ENST00000558620 1985 ntBASIC5.46□□□□□ -1.54
UBE3DQ7Z6J8 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 AC138907.8-201ENST00000623981 2256 ntBASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 Y_RNA.395-201ENST00000383945 109 ntBASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 RNU6-639P-201ENST00000384074 107 ntBASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 RNU6-1013P-201ENST00000384180 107 ntBASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 RNU6-831P-201ENST00000384548 107 ntBASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 U3.20-201ENST00000390909 217 ntBASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 RN7SKP235-201ENST00000410662 305 ntBASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC5.45□□□□□ -1.54
UBE3DQ7Z6J8 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 232 ms