Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 OR6C71P-202ENST00000641886 1107 ntBASIC4.44□□□□□ -1.7
USP41Q3LFD5 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USP41Q3LFD5 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP41Q3LFD5 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USP41Q3LFD5 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USP41Q3LFD5 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
USP41Q3LFD5 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USP41Q3LFD5 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USP41Q3LFD5 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP41Q3LFD5 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USP41Q3LFD5 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 AC116667.1-201ENST00000604855 2072 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP41Q3LFD5 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 SNORD116.1-201ENST00000365628 92 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USP41Q3LFD5 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 RNU6-1151P-201ENST00000384684 107 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP41Q3LFD5 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP41Q3LFD5 TMSB4XP8-201ENST00000402089 135 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 RN7SKP159-201ENST00000410657 292 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 TPT1P2-201ENST00000413105 503 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 TMSB4XP6-201ENST00000415187 135 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 GTF2IP23-201ENST00000423746 351 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 TMSB4XP1-201ENST00000424567 135 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 DPRXP1-201ENST00000426312 460 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 NANOGP6-201ENST00000429190 847 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 GTF2IP7-202ENST00000436677 309 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 MTND1P26-201ENST00000440488 538 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AL357520.1-201ENST00000441557 453 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AC007327.1-201ENST00000447461 264 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 COX6CP18-201ENST00000448769 222 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 AC091951.3-201ENST00000504093 246 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 RNU6-202P-201ENST00000515998 96 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 AC090281.1-201ENST00000523019 276 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 SERPINE4P-201ENST00000554978 281 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AADACP1-206ENST00000561502 1193 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 AC245036.5-201ENST00000596330 847 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AL606490.9-201ENST00000603331 271 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AC069304.3-201ENST00000603938 1084 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AC107952.2-201ENST00000606048 486 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 AC092106.3-201ENST00000611308 722 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 AC026368.1-201ENST00000614934 690 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.43□□□□□ -1.7
USP41Q3LFD5 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USP41Q3LFD5 AP002782.1-201ENST00000623107 614 ntBASIC4.43□□□□□ -1.7
USP41Q3LFD5 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP41Q3LFD5 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USP41Q3LFD5 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP41Q3LFD5 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 RNU4-28P-201ENST00000364739 141 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USP41Q3LFD5 AF228730.1-201ENST00000397972 663 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 PRRC2CP1-201ENST00000404428 159 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 AL590084.1-201ENST00000407885 387 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 RPS24P7-201ENST00000416921 246 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USP41Q3LFD5 HMGB1P49-201ENST00000418882 569 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 BMS1P19-201ENST00000433925 393 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 SEPT7P5-201ENST00000434048 306 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 HMGB1P48-201ENST00000446155 598 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 ABCF2P2-201ENST00000450549 296 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 RN7SL542P-201ENST00000467147 294 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 RPL7P1-201ENST00000468161 747 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 RPL7P9-201ENST00000468715 747 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 BNIP3P41-201ENST00000503774 571 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 AP001207.1-201ENST00000524051 481 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 PHBP17-201ENST00000528576 541 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 AP001317.1-201ENST00000531194 960 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.42□□□□□ -1.7
USP41Q3LFD5 OR4U1P-201ENST00000554958 912 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 MTND3P12-201ENST00000559068 328 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 HMGB3P26-201ENST00000560051 582 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 RN7SL703P-201ENST00000578485 302 ntBASIC4.42□□□□□ -1.7
USP41Q3LFD5 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms