Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA3P55318 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA3P55318 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
FOXA3P55318 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA3P55318 AC093663.1-201ENST00000497190 394 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA3P55318 AC112198.1-201ENST00000505369 1220 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 AC118282.1-201ENST00000506408 765 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 AC110792.2-201ENST00000510278 224 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA3P55318 AC119751.1-201ENST00000513357 765 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 RNA5SP315-201ENST00000516340 116 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 RNA5SP312-201ENST00000517068 116 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 AC007991.1-201ENST00000522680 631 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA3P55318 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC2.48□□□□□ -2.01
FOXA3P55318 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA3P55318 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA3P55318 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA3P55318 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA3P55318 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA3P55318 SS18L2P2-201ENST00000583960 235 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 MIR4506-201ENST00000584693 77 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA3P55318 AL591516.1-201ENST00000611326 274 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 uc_338.1-201ENST00000612113 180 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA3P55318 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA3P55318 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA3P55318 AC116096.1-201ENST00000566804 2314 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
FOXA3P55318 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA3P55318 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
FOXA3P55318 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA3P55318 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.47□□□□□ -2.01
FOXA3P55318 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
FOXA3P55318 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
FOXA3P55318 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
FOXA3P55318 MTND5P24-201ENST00000438892 1767 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
FOXA3P55318 AC004925.1-201ENST00000624256 2706 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
FOXA3P55318 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
FOXA3P55318 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC2.47□□□□□ -2.01
FOXA3P55318 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC2.47□□□□□ -2.01
FOXA3P55318 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
FOXA3P55318 RPL31P1-201ENST00000398116 372 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 BMS1P22-201ENST00000414726 313 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
FOXA3P55318 RPL18P10-201ENST00000425606 538 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 GAS5-208ENST00000425771 242 ntTSL 3 BASIC2.47□□□□□ -2.01
FOXA3P55318 AC023347.2-201ENST00000433994 462 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC2.47□□□□□ -2.01
FOXA3P55318 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC2.47□□□□□ -2.01
FOXA3P55318 UQCRHP3-201ENST00000451503 251 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 PLGLA-201ENST00000465668 449 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC2.47□□□□□ -2.01
FOXA3P55318 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC2.47□□□□□ -2.01
FOXA3P55318 AC005726.1-201ENST00000494679 427 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.47□□□□□ -2.01
FOXA3P55318 AC108064.1-201ENST00000513791 460 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC2.47□□□□□ -2.01
FOXA3P55318 RNA5SP385-201ENST00000515947 110 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 RN7SKP43-201ENST00000516173 320 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 RN7SKP282-201ENST00000516824 299 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC2.47□□□□□ -2.01
FOXA3P55318 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC2.47□□□□□ -2.01
FOXA3P55318 AF279873.1-201ENST00000523393 313 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.47□□□□□ -2.01
FOXA3P55318 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC2.47□□□□□ -2.01
FOXA3P55318 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.47□□□□□ -2.01
FOXA3P55318 AC034268.2-201ENST00000571784 482 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC2.47□□□□□ -2.01
FOXA3P55318 MAGOH2P-202ENST00000584384 429 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 AC092354.2-201ENST00000607786 514 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 MLECP1-201ENST00000615893 709 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 AL590240.3-201ENST00000621416 943 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 AL354798.1-201ENST00000622505 329 ntBASIC2.47□□□□□ -2.01
FOXA3P55318 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC2.47□□□□□ -2.01
FOXA3P55318 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.47□□□□□ -2.01
FOXA3P55318 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC2.47□□□□□ -2.01
FOXA3P55318 METTL8-218ENST00000638989 876 ntTSL 5 BASIC2.47□□□□□ -2.01
FOXA3P55318 METTL8-219ENST00000640734 726 ntTSL 2 BASIC2.47□□□□□ -2.01
FOXA3P55318 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.47□□□□□ -2.01
FOXA3P55318 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC2.47□□□□□ -2.01
FOXA3P55318 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
FOXA3P55318 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.46□□□□□ -2.01
FOXA3P55318 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA3P55318 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA3P55318 GTF2H2B-203ENST00000508065 1432 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA3P55318 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA3P55318 SNORD9-201ENST00000362566 104 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 RNA5SP197-201ENST00000363357 119 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 RNU6-666P-201ENST00000363499 107 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA3P55318 AL354719.1-201ENST00000406535 843 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 RPL5P18-201ENST00000406671 891 ntBASIC2.46□□□□□ -2.02
FOXA3P55318 RN7SKP123-201ENST00000410732 291 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms