Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC5.82□□□□□ -1.48
LIG3P49916 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.82□□□□□ -1.48
LIG3P49916 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC5.82□□□□□ -1.48
LIG3P49916 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.82□□□□□ -1.48
LIG3P49916 ANP32BP3-201ENST00000559213 706 ntBASIC5.82□□□□□ -1.48
LIG3P49916 AL163952.1-202ENST00000569625 600 ntBASIC5.82□□□□□ -1.48
LIG3P49916 MIR4260-201ENST00000583107 67 ntBASIC5.82□□□□□ -1.48
LIG3P49916 AL445222.1-201ENST00000607259 628 ntBASIC5.82□□□□□ -1.48
LIG3P49916 RN7SL544P-201ENST00000617232 284 ntBASIC5.82□□□□□ -1.48
LIG3P49916 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.82□□□□□ -1.48
LIG3P49916 RN7SL763P-201ENST00000620922 284 ntBASIC5.82□□□□□ -1.48
LIG3P49916 RNU6-156P-201ENST00000621869 107 ntBASIC5.82□□□□□ -1.48
LIG3P49916 AC009161.2-201ENST00000624626 138 ntBASIC5.82□□□□□ -1.48
LIG3P49916 AC099654.6-201ENST00000636487 512 ntBASIC5.82□□□□□ -1.48
LIG3P49916 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
LIG3P49916 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC5.82□□□□□ -1.48
LIG3P49916 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LIG3P49916 AC007842.1-201ENST00000597336 2039 ntBASIC5.82□□□□□ -1.48
LIG3P49916 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
LIG3P49916 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 NUP58P1-201ENST00000502546 1738 ntBASIC5.82□□□□□ -1.48
LIG3P49916 AL731532.2-201ENST00000623542 1953 ntBASIC5.82□□□□□ -1.48
LIG3P49916 AC026523.2-201ENST00000625039 7739 ntBASIC5.82□□□□□ -1.48
LIG3P49916 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.82□□□□□ -1.48
LIG3P49916 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
LIG3P49916 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.82□□□□□ -1.48
LIG3P49916 OR13C1P-202ENST00000641378 2919 ntBASIC5.81□□□□□ -1.48
LIG3P49916 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIG3P49916 AC097714.1-201ENST00000511272 1647 ntBASIC5.81□□□□□ -1.48
LIG3P49916 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG3P49916 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG3P49916 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG3P49916 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.81□□□□□ -1.48
LIG3P49916 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIG3P49916 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
LIG3P49916 CKAP2P1-201ENST00000555477 2049 ntBASIC5.81□□□□□ -1.48
LIG3P49916 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.81□□□□□ -1.48
LIG3P49916 PANDAR-201ENST00000629595 1506 ntBASIC5.81□□□□□ -1.48
LIG3P49916 OR52B1P-201ENST00000316506 909 ntBASIC5.81□□□□□ -1.48
LIG3P49916 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIG3P49916 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIG3P49916 RPS4XP8-201ENST00000402039 771 ntBASIC5.81□□□□□ -1.48
LIG3P49916 RSU1P3-201ENST00000412878 835 ntBASIC5.81□□□□□ -1.48
LIG3P49916 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG3P49916 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.81□□□□□ -1.48
LIG3P49916 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC5.81□□□□□ -1.48
LIG3P49916 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC5.81□□□□□ -1.48
LIG3P49916 HMGB3P24-201ENST00000433260 622 ntBASIC5.81□□□□□ -1.48
LIG3P49916 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.81□□□□□ -1.48
LIG3P49916 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG3P49916 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.81□□□□□ -1.48
LIG3P49916 AC064862.4-201ENST00000442180 334 ntBASIC5.81□□□□□ -1.48
LIG3P49916 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC5.81□□□□□ -1.48
LIG3P49916 RPS17P15-201ENST00000475609 349 ntBASIC5.81□□□□□ -1.48
LIG3P49916 RPL7P39-201ENST00000481157 744 ntBASIC5.81□□□□□ -1.48
LIG3P49916 RPS4XP14-201ENST00000493072 781 ntBASIC5.81□□□□□ -1.48
LIG3P49916 NIFKP7-201ENST00000503365 834 ntBASIC5.81□□□□□ -1.48
LIG3P49916 NPM1P41-201ENST00000512920 831 ntBASIC5.81□□□□□ -1.48
LIG3P49916 CYCSP22-201ENST00000517555 339 ntBASIC5.81□□□□□ -1.48
LIG3P49916 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG3P49916 AC112191.2-201ENST00000522428 333 ntBASIC5.81□□□□□ -1.48
LIG3P49916 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.81□□□□□ -1.48
LIG3P49916 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC5.81□□□□□ -1.48
LIG3P49916 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC5.81□□□□□ -1.48
LIG3P49916 AC127381.1-201ENST00000555979 939 ntBASIC5.81□□□□□ -1.48
LIG3P49916 AC034105.3-201ENST00000565294 442 ntBASIC5.81□□□□□ -1.48
LIG3P49916 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.81□□□□□ -1.48
LIG3P49916 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG3P49916 NF1P5-201ENST00000588287 448 ntBASIC5.81□□□□□ -1.48
LIG3P49916 AC007497.1-201ENST00000610421 561 ntBASIC5.81□□□□□ -1.48
LIG3P49916 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.81□□□□□ -1.48
LIG3P49916 AC091953.2-201ENST00000623979 160 ntBASIC5.81□□□□□ -1.48
LIG3P49916 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG3P49916 AL355480.1-201ENST00000629041 99 ntBASIC5.81□□□□□ -1.48
LIG3P49916 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG3P49916 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.81□□□□□ -1.48
LIG3P49916 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
LIG3P49916 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.81□□□□□ -1.48
LIG3P49916 SMG1P4-204ENST00000523028 4131 ntBASIC5.81□□□□□ -1.48
LIG3P49916 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
LIG3P49916 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
LIG3P49916 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
LIG3P49916 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
LIG3P49916 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.81□□□□□ -1.48
LIG3P49916 AC130650.2-201ENST00000618736 2403 ntBASIC5.8□□□□□ -1.48
LIG3P49916 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.8□□□□□ -1.48
LIG3P49916 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.8□□□□□ -1.48
LIG3P49916 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
LIG3P49916 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
LIG3P49916 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms