Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.97□□□□□ -1.77
COL18A1P39060 AL450472.3-201ENST00000615578 367 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 AC068722.2-201ENST00000618734 544 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
COL18A1P39060 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL18A1P39060 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL18A1P39060 GABRG2-229ENST00000641017 3628 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.97□□□□□ -1.77
COL18A1P39060 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.97□□□□□ -1.77
COL18A1P39060 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL18A1P39060 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.97□□□□□ -1.77
COL18A1P39060 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.97□□□□□ -1.77
COL18A1P39060 AL445529.1-201ENST00000398713 389 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.97□□□□□ -1.77
COL18A1P39060 GLRXP1-201ENST00000423261 334 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 AP001207.2-201ENST00000519490 539 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL18A1P39060 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.97□□□□□ -1.77
COL18A1P39060 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.97□□□□□ -1.77
COL18A1P39060 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
COL18A1P39060 AC010149.2-201ENST00000637608 315 ntBASIC3.97□□□□□ -1.77
COL18A1P39060 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
COL18A1P39060 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL18A1P39060 SNORA9.2-201ENST00000365361 133 ntBASIC3.96□□□□□ -1.78
COL18A1P39060 AL035407.1-201ENST00000429211 571 ntBASIC3.96□□□□□ -1.78
COL18A1P39060 NAP1L4P3-201ENST00000432820 1147 ntBASIC3.96□□□□□ -1.78
COL18A1P39060 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.96□□□□□ -1.78
COL18A1P39060 AC135999.1-201ENST00000478962 479 ntBASIC3.96□□□□□ -1.78
COL18A1P39060 RN7SL20P-201ENST00000488827 297 ntBASIC3.96□□□□□ -1.78
COL18A1P39060 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC3.96□□□□□ -1.78
COL18A1P39060 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.96□□□□□ -1.78
COL18A1P39060 PLCE1P1-201ENST00000622094 305 ntBASIC3.96□□□□□ -1.78
COL18A1P39060 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL18A1P39060 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC3.96□□□□□ -1.78
COL18A1P39060 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.96□□□□□ -1.78
COL18A1P39060 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL18A1P39060 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
COL18A1P39060 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.95□□□□□ -1.78
COL18A1P39060 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL18A1P39060 PROS2P-201ENST00000474651 1951 ntBASIC3.95□□□□□ -1.78
COL18A1P39060 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.95□□□□□ -1.78
COL18A1P39060 RPL7P36-201ENST00000444633 681 ntBASIC3.95□□□□□ -1.78
COL18A1P39060 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL18A1P39060 HCG17-214ENST00000453558 732 ntTSL 5 BASIC3.95□□□□□ -1.78
COL18A1P39060 Y_RNA.638-201ENST00000459374 113 ntBASIC3.95□□□□□ -1.78
COL18A1P39060 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.95□□□□□ -1.78
COL18A1P39060 AC083906.5-201ENST00000503722 328 ntBASIC3.95□□□□□ -1.78
COL18A1P39060 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC3.95□□□□□ -1.78
COL18A1P39060 SETP12-201ENST00000514068 805 ntBASIC3.95□□□□□ -1.78
COL18A1P39060 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC3.95□□□□□ -1.78
COL18A1P39060 AC109329.2-201ENST00000519658 482 ntBASIC3.95□□□□□ -1.78
COL18A1P39060 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC3.95□□□□□ -1.78
COL18A1P39060 AC019080.5-201ENST00000624891 757 ntBASIC3.95□□□□□ -1.78
COL18A1P39060 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.95□□□□□ -1.78
COL18A1P39060 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.95□□□□□ -1.78
COL18A1P39060 AC107027.3-201ENST00000565095 3473 ntBASIC3.95□□□□□ -1.78
COL18A1P39060 SNORA67.4-201ENST00000384688 142 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 AL445528.1-201ENST00000426330 420 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.94□□□□□ -1.78
COL18A1P39060 BX679664.1-201ENST00000434429 253 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.94□□□□□ -1.78
COL18A1P39060 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.94□□□□□ -1.78
COL18A1P39060 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.94□□□□□ -1.78
COL18A1P39060 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.94□□□□□ -1.78
COL18A1P39060 BDH2P1-201ENST00000602288 736 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 AC007566.2-201ENST00000603642 413 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 BNIP3P10-201ENST00000605360 577 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.94□□□□□ -1.78
COL18A1P39060 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL18A1P39060 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL18A1P39060 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
COL18A1P39060 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL18A1P39060 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL18A1P39060 MTCO1P7-201ENST00000419523 1542 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL18A1P39060 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL18A1P39060 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL18A1P39060 MIR34A-201ENST00000385130 110 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 GNG5P5-201ENST00000420444 220 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 AC087499.2-201ENST00000432861 149 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 RPS3P1-201ENST00000456781 192 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.94□□□□□ -1.78
COL18A1P39060 RFPL4AP5-201ENST00000514977 504 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.94□□□□□ -1.78
COL18A1P39060 AC091544.4-201ENST00000555268 342 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 AC073476.4-201ENST00000628409 72 ntBASIC3.94□□□□□ -1.78
COL18A1P39060 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.94□□□□□ -1.78
COL18A1P39060 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC3.94□□□□□ -1.78
COL18A1P39060 ASNSP1-201ENST00000518311 1939 ntBASIC3.93□□□□□ -1.78
COL18A1P39060 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL18A1P39060 RNU6-859P-201ENST00000362728 107 ntBASIC3.93□□□□□ -1.78
COL18A1P39060 AL356057.1-202ENST00000402263 756 ntBASIC3.93□□□□□ -1.78
COL18A1P39060 Z93242.1-201ENST00000427102 353 ntBASIC3.93□□□□□ -1.78
COL18A1P39060 YWHAEP4-201ENST00000505390 198 ntBASIC3.93□□□□□ -1.78
COL18A1P39060 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.93□□□□□ -1.78
COL18A1P39060 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.93□□□□□ -1.78
COL18A1P39060 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC3.93□□□□□ -1.78
COL18A1P39060 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL18A1P39060 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms