Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
BDNFP23560 RNU6-989P-201ENST00000362756 107 ntBASIC4.57□□□□□ -1.68
BDNFP23560 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
BDNFP23560 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.57□□□□□ -1.68
BDNFP23560 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.57□□□□□ -1.68
BDNFP23560 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.57□□□□□ -1.68
BDNFP23560 MTCO1P56-201ENST00000401674 224 ntBASIC4.57□□□□□ -1.68
BDNFP23560 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC4.57□□□□□ -1.68
BDNFP23560 STAT4-203ENST00000409995 709 ntTSL 5 BASIC4.57□□□□□ -1.68
BDNFP23560 RNA5SP36-201ENST00000410197 133 ntBASIC4.57□□□□□ -1.68
BDNFP23560 RNA5SP129-201ENST00000410276 118 ntBASIC4.57□□□□□ -1.68
BDNFP23560 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.57□□□□□ -1.68
BDNFP23560 AL157831.1-201ENST00000426134 473 ntBASIC4.57□□□□□ -1.68
BDNFP23560 RPL31P54-201ENST00000429803 370 ntBASIC4.57□□□□□ -1.68
BDNFP23560 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.57□□□□□ -1.68
BDNFP23560 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.57□□□□□ -1.68
BDNFP23560 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.57□□□□□ -1.68
BDNFP23560 AL512326.1-201ENST00000443050 721 ntBASIC4.57□□□□□ -1.68
BDNFP23560 snoU13.4-201ENST00000458916 104 ntBASIC4.57□□□□□ -1.68
BDNFP23560 snoU109.4-201ENST00000458953 143 ntBASIC4.57□□□□□ -1.68
BDNFP23560 RPL23AP2-201ENST00000471227 466 ntBASIC4.57□□□□□ -1.68
BDNFP23560 AC090013.1-201ENST00000485147 480 ntBASIC4.57□□□□□ -1.68
BDNFP23560 AC079203.1-201ENST00000487972 404 ntBASIC4.57□□□□□ -1.68
BDNFP23560 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC4.57□□□□□ -1.68
BDNFP23560 RPL35P6-201ENST00000490024 372 ntBASIC4.57□□□□□ -1.68
BDNFP23560 AC008958.1-201ENST00000511047 682 ntBASIC4.57□□□□□ -1.68
BDNFP23560 USP9YP5-201ENST00000511770 630 ntBASIC4.57□□□□□ -1.68
BDNFP23560 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.57□□□□□ -1.68
BDNFP23560 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.57□□□□□ -1.68
BDNFP23560 TVP23BP1-201ENST00000557500 617 ntBASIC4.57□□□□□ -1.68
BDNFP23560 ATP5J2P6-201ENST00000565203 266 ntBASIC4.57□□□□□ -1.68
BDNFP23560 RPL23AP92-201ENST00000603609 255 ntBASIC4.57□□□□□ -1.68
BDNFP23560 BNIP3P31-201ENST00000604515 566 ntBASIC4.57□□□□□ -1.68
BDNFP23560 AC055876.5-201ENST00000605667 259 ntBASIC4.57□□□□□ -1.68
BDNFP23560 AL445363.3-201ENST00000623080 671 ntBASIC4.57□□□□□ -1.68
BDNFP23560 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
BDNFP23560 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
BDNFP23560 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.57□□□□□ -1.68
BDNFP23560 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.57□□□□□ -1.68
BDNFP23560 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
BDNFP23560 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
BDNFP23560 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.57□□□□□ -1.68
BDNFP23560 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.56□□□□□ -1.68
BDNFP23560 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BDNFP23560 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.56□□□□□ -1.68
BDNFP23560 EOGT-210ENST00000615922 1931 ntBASIC4.56□□□□□ -1.68
BDNFP23560 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BDNFP23560 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC4.56□□□□□ -1.68
BDNFP23560 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
BDNFP23560 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.56□□□□□ -1.68
BDNFP23560 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BDNFP23560 MIR383-201ENST00000362257 73 ntBASIC4.56□□□□□ -1.68
BDNFP23560 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
BDNFP23560 RNU6-629P-201ENST00000384061 103 ntBASIC4.56□□□□□ -1.68
BDNFP23560 MIR506-201ENST00000384998 124 ntBASIC4.56□□□□□ -1.68
BDNFP23560 RN7SKP167-201ENST00000411047 285 ntBASIC4.56□□□□□ -1.68
BDNFP23560 AL160275.2-201ENST00000412010 394 ntBASIC4.56□□□□□ -1.68
BDNFP23560 TOMM22P1-201ENST00000418578 312 ntBASIC4.56□□□□□ -1.68
BDNFP23560 AC099677.1-201ENST00000420575 175 ntBASIC4.56□□□□□ -1.68
BDNFP23560 RPL23AP38-201ENST00000423801 469 ntBASIC4.56□□□□□ -1.68
BDNFP23560 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
BDNFP23560 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.56□□□□□ -1.68
BDNFP23560 AL132765.1-201ENST00000434165 553 ntBASIC4.56□□□□□ -1.68
BDNFP23560 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.56□□□□□ -1.68
BDNFP23560 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
BDNFP23560 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
BDNFP23560 RNA5SP519-201ENST00000516480 119 ntBASIC4.56□□□□□ -1.68
BDNFP23560 MRPL49P2-201ENST00000521066 465 ntBASIC4.56□□□□□ -1.68
BDNFP23560 AC010376.1-201ENST00000522101 334 ntBASIC4.56□□□□□ -1.68
BDNFP23560 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.56□□□□□ -1.68
BDNFP23560 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC4.56□□□□□ -1.68
BDNFP23560 RPL23AP97-201ENST00000568955 471 ntBASIC4.56□□□□□ -1.68
BDNFP23560 MIR5708-201ENST00000579723 85 ntBASIC4.56□□□□□ -1.68
BDNFP23560 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.56□□□□□ -1.68
BDNFP23560 AL445435.1-201ENST00000604232 665 ntBASIC4.56□□□□□ -1.68
BDNFP23560 AC011816.2-201ENST00000607089 556 ntBASIC4.56□□□□□ -1.68
BDNFP23560 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
BDNFP23560 AC007546.1-201ENST00000619452 559 ntBASIC4.56□□□□□ -1.68
BDNFP23560 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
BDNFP23560 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BDNFP23560 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.56□□□□□ -1.68
BDNFP23560 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
BDNFP23560 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
BDNFP23560 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
BDNFP23560 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.55□□□□□ -1.68
BDNFP23560 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
BDNFP23560 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
BDNFP23560 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
BDNFP23560 AL121657.1-201ENST00000327215 531 ntBASIC4.55□□□□□ -1.68
BDNFP23560 MIR195-201ENST00000385194 87 ntBASIC4.55□□□□□ -1.68
BDNFP23560 RN7SKP235-201ENST00000410662 305 ntBASIC4.55□□□□□ -1.68
BDNFP23560 MIR1911-201ENST00000410783 80 ntBASIC4.55□□□□□ -1.68
BDNFP23560 VDAC1P9-201ENST00000412766 841 ntBASIC4.55□□□□□ -1.68
BDNFP23560 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC4.55□□□□□ -1.68
BDNFP23560 KRR1P1-201ENST00000419430 803 ntBASIC4.55□□□□□ -1.68
BDNFP23560 AL391219.1-201ENST00000422570 483 ntBASIC4.55□□□□□ -1.68
BDNFP23560 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.55□□□□□ -1.68
BDNFP23560 RPL7P52-201ENST00000449200 742 ntBASIC4.55□□□□□ -1.68
BDNFP23560 HMGB1P15-201ENST00000453854 435 ntBASIC4.55□□□□□ -1.68
BDNFP23560 CFTRP1-201ENST00000456646 183 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms