Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 FAM157B-203ENST00000639350 358 ntBASIC3.8□□□□□ -1.8
LHX3Q9UBR4 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
LHX3Q9UBR4 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AC107081.3-201ENST00000612715 2034 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 SNORD3H-201ENST00000384486 214 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 RNU6ATAC-201ENST00000408749 126 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 UBE2V1P9-201ENST00000414760 368 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AL513175.1-201ENST00000431492 780 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 YWHAZP8-201ENST00000436935 731 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AL356535.1-201ENST00000440335 398 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 NDUFS5P3-201ENST00000450668 321 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AC098824.1-201ENST00000453565 980 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 RPL21P103-201ENST00000479921 488 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 HMGB3P13-201ENST00000511263 607 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 SAP18P1-201ENST00000512058 390 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 RNU6-488P-201ENST00000515918 99 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 SOD1P3-201ENST00000518682 454 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 SUMO2P20-201ENST00000520803 283 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 MED28P5-201ENST00000528254 438 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 MTND2P26-201ENST00000528255 1029 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 CYB5AP5-201ENST00000549779 389 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AC004217.3-201ENST00000551552 878 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 CYP2C60P-201ENST00000566088 139 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AC112230.1-201ENST00000604342 547 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AC013468.1-201ENST00000608680 598 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AC006927.2-201ENST00000639256 389 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AC018555.1-201ENST00000567548 1980 ntBASIC3.79□□□□□ -1.8
LHX3Q9UBR4 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.79□□□□□ -1.8
LHX3Q9UBR4 AL136964.1-201ENST00000622038 2990 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 MTND4P26-201ENST00000415971 1359 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 MIR153-1-201ENST00000384914 90 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 RNA5SP424-201ENST00000390988 115 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 DSTNP4-201ENST00000399472 474 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AL035405.1-201ENST00000400795 710 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC069282.1-201ENST00000411911 526 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 RPL31P45-201ENST00000419532 356 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC013262.1-201ENST00000426710 252 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 SEPT14P24-201ENST00000447236 180 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 HMGN1P5-201ENST00000448591 263 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 RNU7-140P-201ENST00000459546 60 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC087385.1-201ENST00000475062 312 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 ACTR3P3-201ENST00000480448 893 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC112198.4-201ENST00000515450 351 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 RN7SKP234-201ENST00000517173 224 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 HIGD1AP6-201ENST00000521833 279 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 OR7E13P-201ENST00000526052 910 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC068339.2-201ENST00000534395 618 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC087894.1-201ENST00000538359 518 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC006518.2-201ENST00000542513 940 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 GTF2IP22-201ENST00000554443 182 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 AC010735.1-201ENST00000567305 1026 ntBASIC3.78□□□□□ -1.8
LHX3Q9UBR4 BPTFP1-201ENST00000579209 492 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms