Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
PCDH9Q9HC56 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC4.29□□□□□ -1.72
PCDH9Q9HC56 TVP23BP1-201ENST00000557500 617 ntBASIC4.29□□□□□ -1.72
PCDH9Q9HC56 MRPS35P3-201ENST00000603189 709 ntBASIC4.29□□□□□ -1.72
PCDH9Q9HC56 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.29□□□□□ -1.72
PCDH9Q9HC56 AC107075.1-201ENST00000613695 314 ntBASIC4.29□□□□□ -1.72
PCDH9Q9HC56 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.29□□□□□ -1.72
PCDH9Q9HC56 AC018926.3-201ENST00000618841 406 ntBASIC4.29□□□□□ -1.72
PCDH9Q9HC56 AC022509.4-201ENST00000621404 572 ntBASIC4.29□□□□□ -1.72
PCDH9Q9HC56 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.29□□□□□ -1.72
PCDH9Q9HC56 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.29□□□□□ -1.72
PCDH9Q9HC56 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
PCDH9Q9HC56 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
PCDH9Q9HC56 SGO1P1-201ENST00000603525 1447 ntBASIC4.29□□□□□ -1.72
PCDH9Q9HC56 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
PCDH9Q9HC56 AL356489.2-201ENST00000566968 3528 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 RNU4-40P-201ENST00000364351 143 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 MIR141-201ENST00000384975 95 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 Y_RNA.625-201ENST00000411256 107 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 RPL23AP26-201ENST00000412728 464 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 CHIAP3-201ENST00000423668 1133 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 VDAC1P6-201ENST00000430062 855 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 RPL7P31-201ENST00000450192 724 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 RNU6-1218P-201ENST00000458990 108 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 GAPDHP39-201ENST00000481866 979 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AC109471.1-201ENST00000511631 612 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AC093755.1-201ENST00000512950 1023 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 OR4C2P-201ENST00000530855 1064 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 MIR4716-201ENST00000579628 84 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AC115085.1-201ENST00000588924 229 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 IPO5P1-202ENST00000600039 287 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 NTAN1P1-201ENST00000603150 646 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AL133507.1-201ENST00000605269 557 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AC080013.3-201ENST00000606839 578 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AC093783.1-201ENST00000612976 329 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AC131159.1-201ENST00000621854 213 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AC116563.2-201ENST00000624751 535 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AC012020.1-201ENST00000624541 1728 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AC046144.1-201ENST00000478559 1853 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 PNPT1P2-201ENST00000456768 2050 ntBASIC4.28□□□□□ -1.72
PCDH9Q9HC56 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.28□□□□□ -1.72
PCDH9Q9HC56 AC025263.3-201ENST00000622965 1396 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC134882.1-201ENST00000603738 1676 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC126755.2-208ENST00000327792 462 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC138969.1-213ENST00000331436 462 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 MIR16-1-201ENST00000385271 89 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 PGBD4P8-201ENST00000412993 562 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 MTND2P18-201ENST00000419962 1030 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC092647.1-201ENST00000420654 287 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 SETP8-201ENST00000435341 628 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AL008629.1-201ENST00000438615 184 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 RPL23AP76-201ENST00000441860 458 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC104978.1-201ENST00000449387 391 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 HMGB3P21-201ENST00000452483 547 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC109327.1-201ENST00000471666 403 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 UQCRHP4-201ENST00000471686 272 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 MTND2P14-201ENST00000482139 351 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC091167.1-201ENST00000492017 396 ntBASIC4.27□□□□□ -1.73
PCDH9Q9HC56 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
PCDH9Q9HC56 AC108475.1-201ENST00000507880 950 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms