Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 AC112187.2-201ENST00000604345 283 ntBASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 NDUFA8P1-201ENST00000605525 367 ntBASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 AC078899.5-201ENST00000612475 178 ntBASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 AC025574.1-201ENST00000554784 1653 ntBASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CTHRC1Q96CG8 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.46□□□□□ -1.69
CTHRC1Q96CG8 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC4.46□□□□□ -1.69
CTHRC1Q96CG8 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.46□□□□□ -1.69
CTHRC1Q96CG8 STX3-208ENST00000641815 3236 ntBASIC4.46□□□□□ -1.69
CTHRC1Q96CG8 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.46□□□□□ -1.69
CTHRC1Q96CG8 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC117529.2-201ENST00000512159 2068 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AL359922.3-201ENST00000624779 1670 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 Y_RNA.6-201ENST00000362350 114 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 RNU6-517P-201ENST00000384362 110 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AL121972.1-201ENST00000402023 252 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AP000580.1-201ENST00000404439 358 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AL023807.1-201ENST00000407932 359 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 MIR320C1-201ENST00000408566 88 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 RN7SKP100-201ENST00000411258 284 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 UBE2V1P10-201ENST00000414685 269 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 E2F6P2-201ENST00000420708 748 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 OR2B8P-201ENST00000432841 938 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC023347.2-201ENST00000433994 462 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 NMNAT1P2-201ENST00000435192 860 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC004938.1-201ENST00000438468 308 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AL772161.1-201ENST00000439130 476 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AL357520.1-201ENST00000441557 453 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC091564.1-201ENST00000464563 479 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC011825.1-201ENST00000484967 388 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC083982.1-201ENST00000485679 344 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 RPL30P11-201ENST00000495304 339 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 RNU1-6P-201ENST00000516290 144 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AP002453.2-201ENST00000533503 320 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 CYCSP28-201ENST00000534284 321 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC008127.2-201ENST00000549925 1075 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 ZNF519P3-201ENST00000557158 1032 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC091489.2-201ENST00000566263 604 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 MIR4737-201ENST00000583979 81 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 PRELID3BP8-201ENST00000604148 295 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AL391358.1-201ENST00000605342 190 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 FAM27B-201ENST00000610601 213 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AL359535.1-201ENST00000612100 1087 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC027807.2-201ENST00000616099 408 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC068722.2-201ENST00000618734 544 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AP001005.3-201ENST00000622049 129 ntBASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
CTHRC1Q96CG8 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.45□□□□□ -1.7
CTHRC1Q96CG8 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CTHRC1Q96CG8 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
CTHRC1Q96CG8 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
CTHRC1Q96CG8 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
CTHRC1Q96CG8 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.45□□□□□ -1.7
CTHRC1Q96CG8 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.45□□□□□ -1.7
CTHRC1Q96CG8 TEX21P-201ENST00000447107 1476 ntBASIC4.45□□□□□ -1.7
CTHRC1Q96CG8 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CTHRC1Q96CG8 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
CTHRC1Q96CG8 RNU5F-6P-201ENST00000362979 116 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms