Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6-501P-201ENST00000364072 100 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 RNU6-921P-201ENST00000384361 107 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 MIR649-201ENST00000384843 97 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 PGBD4P8-201ENST00000412993 562 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC114755.2-201ENST00000413520 361 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 CDK8P2-201ENST00000415020 547 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 RPS3AP9-201ENST00000417027 792 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AL807761.1-201ENST00000417622 171 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC083875.1-201ENST00000419509 405 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AL158073.1-201ENST00000426848 1104 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 LARP1BP3-201ENST00000437229 869 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AL450263.2-201ENST00000439400 589 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AL592447.1-201ENST00000447592 540 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 OR4G11P-201ENST00000492842 939 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 RPL30P11-201ENST00000495304 339 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 CYCSP28-201ENST00000534284 321 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AP001880.2-201ENST00000538233 448 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC079075.1-201ENST00000559543 878 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 RN7SL802P-201ENST00000577858 299 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC110743.1-201ENST00000584870 478 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC022726.1-201ENST00000587475 207 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC078795.2-201ENST00000602835 1252 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AC079089.3-201ENST00000603094 673 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AL139286.2-201ENST00000606838 396 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AL359535.1-201ENST00000612100 1087 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 MIR8069-1-201ENST00000616627 86 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 MIR8069-2-201ENST00000621412 86 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 AL359922.3-201ENST00000624779 1670 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 SALL4P2-201ENST00000423288 2910 ntBASIC4.66□□□□□ -1.66
PTCHD3Q3KNS1 MTND4P4-201ENST00000439033 1366 ntBASIC4.65□□□□□ -1.66
PTCHD3Q3KNS1 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.65□□□□□ -1.66
PTCHD3Q3KNS1 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.65□□□□□ -1.66
PTCHD3Q3KNS1 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.65□□□□□ -1.66
PTCHD3Q3KNS1 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
PTCHD3Q3KNS1 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
PTCHD3Q3KNS1 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.65□□□□□ -1.66
PTCHD3Q3KNS1 MTND5P29-201ENST00000458676 1807 ntBASIC4.65□□□□□ -1.66
PTCHD3Q3KNS1 AC135352.1-201ENST00000506173 1418 ntBASIC4.65□□□□□ -1.66
PTCHD3Q3KNS1 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 RNU4-75P-201ENST00000364621 146 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 RNY3P10-201ENST00000384764 102 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 MIR192-201ENST00000384915 110 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 U3.30-201ENST00000391308 210 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 HMGB1P17-201ENST00000403495 628 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 AL590139.1-201ENST00000416267 400 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 AL645608.4-201ENST00000423619 154 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 OR2B7P-201ENST00000429302 934 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 ZYG11AP1-201ENST00000430329 837 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 NMNAT1P2-201ENST00000435192 860 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 YWHAZP8-201ENST00000436935 731 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 RPL23AP16-201ENST00000441715 421 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.65□□□□□ -1.67
PTCHD3Q3KNS1 MRPL48P1-201ENST00000445390 636 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 226.7 ms