Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 MTND4P26-201ENST00000415971 1359 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 AC108467.2-201ENST00000617640 1597 ntBASIC4.35□□□□□ -1.71
COL28A1Q2UY09 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL28A1Q2UY09 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AL672167.1-205ENST00000641112 3080 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 FAM133CP-201ENST00000332869 704 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 MIR383-201ENST00000362257 73 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 RNU1-108P-201ENST00000362556 161 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 RNU6-492P-201ENST00000363035 104 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 RNU6-621P-201ENST00000364752 109 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 MIR7-3-201ENST00000384898 110 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 MIR449B-201ENST00000384995 97 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 RNU2-21P-201ENST00000410368 188 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AL008987.1-201ENST00000415528 237 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 SKP1P3-201ENST00000429280 487 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 CETN4P-201ENST00000432407 469 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 MTCYBP31-201ENST00000438855 1122 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 MTND6P18-201ENST00000439477 513 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC069285.2-201ENST00000440210 275 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 EXTL2P1-201ENST00000446218 416 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 NDUFA5P7-201ENST00000452914 242 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 RN7SL98P-201ENST00000462271 300 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC010469.1-201ENST00000463864 576 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC010307.1-201ENST00000467206 836 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 ACTG1P13-201ENST00000486987 1043 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC091951.3-201ENST00000504093 246 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC079395.1-201ENST00000510981 262 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 RN7SKP31-201ENST00000516354 278 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC022790.1-201ENST00000522872 204 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 CASP1-212ENST00000531166 300 ntTSL 5 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC010198.2-201ENST00000550612 259 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC068446.3-201ENST00000555285 382 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 MIR3124-201ENST00000582636 67 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 VN1R78P-201ENST00000597393 564 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 ELOCP35-201ENST00000604289 336 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AL451074.6-201ENST00000608512 729 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 TUSC7.1-201ENST00000610969 165 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC005332.6-201ENST00000613178 446 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 MIR6875-201ENST00000617506 72 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 CR392039.5-201ENST00000623201 510 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC112484.5-201ENST00000624189 228 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AC109315.1-201ENST00000584143 1347 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AL136164.3-201ENST00000624429 3978 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.34□□□□□ -1.71
COL28A1Q2UY09 AL359922.3-201ENST00000624779 1670 ntBASIC4.34□□□□□ -1.71
COL28A1Q2UY09 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
COL28A1Q2UY09 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL28A1Q2UY09 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AL592437.2-201ENST00000421655 2434 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AL445487.1-201ENST00000415694 1580 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 OR10J6P-201ENST00000289731 930 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 OR52B1P-201ENST00000316506 909 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 MIR448-201ENST00000362131 111 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL28A1Q2UY09 MIR491-201ENST00000384877 84 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 RPS3AP9-201ENST00000417027 792 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC092634.6-201ENST00000418558 192 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 MTND2P16-201ENST00000419987 799 ntBASIC4.33□□□□□ -1.72
COL28A1Q2UY09 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms