Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RPL21P109-201ENST00000422213 475 ntBASIC2.2□□□□□ -2.06
PRKDCP78527 NPM1P24-201ENST00000428039 894 ntBASIC2.2□□□□□ -2.06
PRKDCP78527 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC2.2□□□□□ -2.06
PRKDCP78527 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC2.2□□□□□ -2.06
PRKDCP78527 DLD-204ENST00000437604 1859 ntTSL 2 BASIC2.2□□□□□ -2.06
PRKDCP78527 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
PRKDCP78527 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.2□□□□□ -2.06
PRKDCP78527 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC2.2□□□□□ -2.06
PRKDCP78527 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
PRKDCP78527 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
PRKDCP78527 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
PRKDCP78527 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC2.2□□□□□ -2.06
PRKDCP78527 NAP1L1P2-201ENST00000414182 1089 ntBASIC2.2□□□□□ -2.06
PRKDCP78527 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.2□□□□□ -2.06
PRKDCP78527 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.2□□□□□ -2.06
PRKDCP78527 AC008280.2-201ENST00000455473 307 ntBASIC2.2□□□□□ -2.06
PRKDCP78527 RPL5P30-201ENST00000465511 891 ntBASIC2.2□□□□□ -2.06
PRKDCP78527 GAPDHP39-201ENST00000481866 979 ntBASIC2.2□□□□□ -2.06
PRKDCP78527 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC2.2□□□□□ -2.06
PRKDCP78527 RN7SKP116-201ENST00000516902 319 ntBASIC2.2□□□□□ -2.06
PRKDCP78527 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC2.2□□□□□ -2.06
PRKDCP78527 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.2□□□□□ -2.06
PRKDCP78527 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
PRKDCP78527 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
PRKDCP78527 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.2□□□□□ -2.06
PRKDCP78527 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
PRKDCP78527 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
PRKDCP78527 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC2.19□□□□□ -2.06
PRKDCP78527 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC2.19□□□□□ -2.06
PRKDCP78527 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
PRKDCP78527 RPS4XP7-201ENST00000406274 780 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC2.19□□□□□ -2.06
PRKDCP78527 AC002075.2-201ENST00000425207 252 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 AC074367.1-201ENST00000438685 1125 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 AC099560.2-201ENST00000457554 255 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 RPL9P32-201ENST00000464118 620 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 AC017037.1-201ENST00000508460 471 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC2.19□□□□□ -2.06
PRKDCP78527 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC2.19□□□□□ -2.06
PRKDCP78527 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC2.19□□□□□ -2.06
PRKDCP78527 AC007318.2-201ENST00000620999 243 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
PRKDCP78527 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC2.19□□□□□ -2.06
PRKDCP78527 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC2.19□□□□□ -2.06
PRKDCP78527 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
PRKDCP78527 JKAMPP1-201ENST00000413804 919 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 RPS12P18-201ENST00000442381 270 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.19□□□□□ -2.06
PRKDCP78527 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
PRKDCP78527 AC007566.2-201ENST00000603642 413 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 MAPK10-322ENST00000641485 4530 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC2.19□□□□□ -2.06
PRKDCP78527 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC2.19□□□□□ -2.06
PRKDCP78527 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC2.19□□□□□ -2.06
PRKDCP78527 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC2.19□□□□□ -2.06
PRKDCP78527 FAM35DP-201ENST00000323387 2712 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
PRKDCP78527 CEP170P1-201ENST00000502249 4587 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
PRKDCP78527 Y_RNA.796-201ENST00000364268 102 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 Y_RNA.799-201ENST00000364992 102 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 RNU6-851P-201ENST00000384565 107 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC2.19□□□□□ -2.06
PRKDCP78527 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC2.19□□□□□ -2.06
PRKDCP78527 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC2.19□□□□□ -2.06
PRKDCP78527 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC2.19□□□□□ -2.06
PRKDCP78527 ELOCP23-201ENST00000452014 332 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 RN7SKP210-201ENST00000459176 261 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 SEC11B-201ENST00000518383 499 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.19□□□□□ -2.06
PRKDCP78527 AC027290.2-201ENST00000623210 18662 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 SAGE4P-201ENST00000442271 3381 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 AC006484.1-201ENST00000435086 1884 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
PRKDCP78527 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
PRKDCP78527 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.19□□□□□ -2.06
PRKDCP78527 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC2.19□□□□□ -2.06
PRKDCP78527 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC2.19□□□□□ -2.06
PRKDCP78527 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC2.19□□□□□ -2.06
PRKDCP78527 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
PRKDCP78527 RNU6-482P-201ENST00000391068 107 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 NPM1P38-201ENST00000403835 865 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 AL450338.1-201ENST00000407987 512 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 RPL31P13-201ENST00000484151 370 ntBASIC2.19□□□□□ -2.06
PRKDCP78527 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC2.19□□□□□ -2.06
PRKDCP78527 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.19□□□□□ -2.06
PRKDCP78527 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC2.19□□□□□ -2.06
PRKDCP78527 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC2.18□□□□□ -2.06
PRKDCP78527 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
PRKDCP78527 ATF1P1-201ENST00000406040 927 ntBASIC2.18□□□□□ -2.06
PRKDCP78527 SNORA3.2-201ENST00000408221 125 ntBASIC2.18□□□□□ -2.06
PRKDCP78527 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.18□□□□□ -2.06
PRKDCP78527 SKP1P1-201ENST00000438081 489 ntBASIC2.18□□□□□ -2.06
PRKDCP78527 FAM103A2P-201ENST00000444122 354 ntBASIC2.18□□□□□ -2.06
PRKDCP78527 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC2.18□□□□□ -2.06
PRKDCP78527 AC025445.1-201ENST00000502728 300 ntBASIC2.18□□□□□ -2.06
PRKDCP78527 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.18□□□□□ -2.06
PRKDCP78527 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.18□□□□□ -2.06
PRKDCP78527 AC244517.3-201ENST00000616254 1235 ntBASIC2.18□□□□□ -2.06
PRKDCP78527 PLCE1P1-201ENST00000622094 305 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms