Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MIR4276-201ENST00000584832 70 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXA1P55317 AP001542.1-201ENST00000591314 200 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.13□□□□□ -1.91
FOXA1P55317 AC103710.3-201ENST00000608157 948 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AC019131.2-201ENST00000609071 870 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AL391597.1-201ENST00000618707 694 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AL133370.2-201ENST00000619934 439 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AC000123.2-201ENST00000623124 461 ntBASIC3.13□□□□□ -1.91
FOXA1P55317 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC3.13□□□□□ -1.91
FOXA1P55317 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA1P55317 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.13□□□□□ -1.91
FOXA1P55317 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA1P55317 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXA1P55317 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA1P55317 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA1P55317 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXA1P55317 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXA1P55317 AC110792.3-201ENST00000595906 1614 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
FOXA1P55317 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA1P55317 RAD1P1-201ENST00000231383 813 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 U3.6-201ENST00000363622 211 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
FOXA1P55317 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXA1P55317 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXA1P55317 PTMAP2-201ENST00000397627 327 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 HMGN1P24-201ENST00000412282 298 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXA1P55317 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXA1P55317 AJ239321.1-201ENST00000424255 564 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA1P55317 Z85994.2-201ENST00000434327 452 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 AC093716.1-201ENST00000435923 377 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 FTH1P1-201ENST00000437933 532 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 AL157884.3-201ENST00000448273 1184 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 BUD31P2-201ENST00000449374 300 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 CEACAMP4-201ENST00000457676 421 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 AC021205.1-201ENST00000468797 348 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXA1P55317 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.12□□□□□ -1.91
FOXA1P55317 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA1P55317 SNORD116-26-201ENST00000516006 96 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 PAICSP4-201ENST00000517543 1253 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXA1P55317 IGKV2D-19-201ENST00000523346 262 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXA1P55317 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXA1P55317 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXA1P55317 AC087888.1-201ENST00000550884 1254 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXA1P55317 MIR5186-201ENST00000577504 120 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 AC053481.3-201ENST00000577881 843 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 U3.45-201ENST00000607547 219 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 AC092628.2-201ENST00000622492 339 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXA1P55317 AC009452.1-201ENST00000640823 606 ntBASIC3.12□□□□□ -1.91
FOXA1P55317 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
FOXA1P55317 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA1P55317 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA1P55317 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXA1P55317 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA1P55317 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.12□□□□□ -1.91
FOXA1P55317 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA1P55317 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.11□□□□□ -1.91
FOXA1P55317 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
FOXA1P55317 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
FOXA1P55317 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
FOXA1P55317 RNU6-618P-201ENST00000363518 112 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 RNU6-328P-201ENST00000390887 106 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 RPS29P4-201ENST00000414733 161 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 LINC01881-201ENST00000416103 412 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 TRAPPC2P5-201ENST00000426293 308 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 AL451062.2-201ENST00000427515 271 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 RPL7P31-201ENST00000450192 724 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXA1P55317 AC008155.2-201ENST00000464337 397 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA1P55317 AL049830.2-201ENST00000480072 201 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA1P55317 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXA1P55317 AC117525.1-201ENST00000515228 503 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA1P55317 AC245166.1-201ENST00000521012 253 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA1P55317 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA1P55317 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA1P55317 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA1P55317 MIR2682-201ENST00000580305 110 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA1P55317 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.11□□□□□ -1.91
FOXA1P55317 AC083899.3-201ENST00000603413 594 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA1P55317 AL450489.1-201ENST00000612071 468 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 AC100793.4-201ENST00000613683 429 ntBASIC3.11□□□□□ -1.91
FOXA1P55317 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXA1P55317 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms